Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.0e-133 478.8 296 100.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-122 443.7 308 84.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.1e-111 407.1 312 76.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 7.5e-108 394.4 303 76.9
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.2e-94 350.5 302 71.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.1e-89 333.2 297 65.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.9e-85 318.2 325 63.7
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 2.3e-80 303.1 301 64.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.5e-76 288.9 288 58.3
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 4.6e-73 278.9 301 66.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.9e-72 275.8 311 53.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.6e-70 270.4 324 58.3
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 6.2e-70 268.5 334 60.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.1e-69 267.7 320 53.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.0e-67 261.2 333 59.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.1e-66 257.7 341 51.0
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.4e-66 257.3 327 54.7
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.4e-66 257.3 338 53.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.4e-66 257.3 334 60.5
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.9e-66 256.9 330 49.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 5.5e-66 255.4 333 48.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 3.5e-65 252.7 321 55.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 7.9e-65 251.5 314 57.3
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 7.9e-65 251.5 305 52.5
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.3e-64 250.8 341 50.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.0e-64 249.6 330 58.5
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.9e-64 249.2 324 53.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.1e-64 248.8 324 53.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.1e-63 247.7 302 50.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.5e-63 246.5 326 56.1
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.3e-63 246.1 319 55.8
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.3e-63 245.7 324 53.4
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.6e-62 243.8 328 53.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.4e-61 240.7 324 54.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.4e-60 236.1 299 48.5
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.9e-59 233.0 297 54.2
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 1.1e-58 231.1 247 64.4
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.4e-58 230.7 296 60.8
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.5e-58 228.8 313 51.4
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.1e-57 226.9 296 58.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.2e-54 216.9 321 44.2
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 6.3e-54 215.3 324 54.6
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.4e-53 214.2 326 44.2
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 6.9e-53 211.8 333 47.4
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 7.7e-52 208.4 328 53.0
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 6.5e-51 205.3 324 47.2
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.1e-50 204.5 344 46.2
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.6e-49 200.7 362 38.4
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.7e-49 199.9 315 41.6
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 5.1e-48 195.7 359 44.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 5.1e-48 195.7 316 48.4
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 8.8e-48 194.9 336 39.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.0e-47 193.7 296 56.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 3.3e-47 193.0 319 48.0
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.2e-46 190.3 341 44.3
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 6.3e-46 188.7 309 53.4
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 8.2e-46 188.3 305 49.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.8e-45 187.2 341 43.1
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 5.3e-45 185.7 296 55.1
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 9.1e-45 184.9 339 48.7
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.2e-43 180.3 308 52.6
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.7e-41 173.3 300 42.0
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.6e-41 172.9 302 46.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 7.4e-39 165.2 299 49.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 9.7e-39 164.9 299 52.5
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.8e-38 162.5 322 43.8
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 7.0e-37 158.7 301 41.9
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.7e-35 154.1 297 51.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-34 150.6 303 50.5
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-34 150.6 303 50.5
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.1e-29 132.9 283 35.3
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-27 127.9 96 66.7
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-19 101.7 174 51.7
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 8.6e-19 98.6 155 37.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.2e-14 84.0 298 28.2
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 7.8e-12 75.5 43 86.0
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.3e-11 73.9 359 33.4
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.9e-10 70.9 211 30.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.6e-10 69.3 61 57.4
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.1e-09 67.4 82 48.8
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.7e-09 66.2 406 29.3
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 8.0e-09 65.5 52 59.6
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.0e-08 63.2 63 50.8
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 4.0e-08 63.2 71 46.5
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.0e-08 63.2 50 62.0
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.2e-08 62.8 58 53.4
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 6.8e-08 62.4 53 54.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.2e-07 61.6 58 55.2
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.5e-07 61.2 45 62.2
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.0e-07 60.8 77 44.2
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.4e-07 60.1 80 41.2
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 3.4e-07 60.1 86 41.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.4e-07 59.7 49 59.2
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.4e-07 59.7 51 54.9
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 5.7e-07 59.3 85 41.2
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.5e-07 58.9 61 47.5
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.5e-07 58.9 80 42.5
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 7.5e-07 58.9 50 58.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 9.8e-07 58.5 83 41.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 9.8e-07 58.5 49 57.1
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.8e-07 58.5 55 50.9
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 9.8e-07 58.5 77 45.5
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 9.8e-07 58.5 48 58.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 9.8e-07 58.5 49 57.1
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 9.8e-07 58.5 49 57.1
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-06 58.2 77 42.9
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.3e-06 58.2 67 47.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.3e-06 58.2 50 56.0
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-06 58.2 67 43.3
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-06 58.2 67 43.3
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.7e-06 57.8 52 53.8
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.2e-06 57.4 52 53.8
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.2e-06 57.4 84 38.1
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.2e-06 57.4 49 57.1
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.2e-06 57.4 50 56.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.2e-06 57.4 50 56.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.9e-06 57.0 50 56.0
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.9e-06 57.0 54 51.9
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.9e-06 57.0 69 40.6
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.9e-06 57.0 58 50.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 3.7e-06 56.6 58 48.3
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.7e-06 56.6 70 45.7
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.7e-06 56.6 55 50.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.7e-06 56.6 57 50.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.9e-06 56.2 69 43.5
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 4.9e-06 56.2 53 50.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-06 56.2 63 44.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-06 56.2 63 44.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.9e-06 56.2 63 44.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 4.9e-06 56.2 55 50.9
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 6.4e-06 55.8 49 53.1
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 6.4e-06 55.8 84 42.9
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.4e-06 55.8 84 42.9
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 6.4e-06 55.8 56 50.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 8.3e-06 55.5 85 38.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.3e-06 55.5 72 40.3


User provided reference genes

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