Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.4e-248 861.7 433 100.0
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.8e-196 688.7 413 86.9
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 5.7e-189 664.5 409 82.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.3e-188 661.0 405 83.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 5.3e-187 657.9 409 82.2
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 4.9e-164 581.6 406 71.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.5e-162 575.5 411 69.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 8.6e-161 570.9 427 67.0
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 3.6e-159 565.5 406 69.0
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.6e-159 565.5 407 70.5
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 6.8e-158 561.2 405 68.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.9e-155 553.1 406 67.2
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 2.3e-153 546.2 406 67.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.9e-153 545.4 411 66.2
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.1e-152 543.9 411 65.5
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.5e-152 543.5 412 65.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 2.5e-152 542.7 406 64.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 8.1e-151 537.7 435 63.2
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 8.9e-150 534.3 414 63.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 7.5e-149 531.2 410 65.4
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 7.5e-149 531.2 413 64.4
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.2e-147 525.8 411 63.5
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.2e-147 525.8 406 65.8
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 5.4e-147 525.0 414 63.8
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 7.1e-147 524.6 408 64.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 9.2e-147 524.2 417 64.0
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.6e-146 523.5 407 64.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.7e-146 522.7 407 65.8
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-146 521.9 411 63.3
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.0e-146 521.5 411 62.5
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.3e-145 520.4 411 62.8
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 3.9e-145 518.8 406 63.3
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.9e-144 516.5 411 62.3
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.9e-144 516.5 406 61.1
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 2.5e-144 516.2 406 62.8
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 2.5e-144 516.2 408 65.0
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 4.3e-144 515.4 406 63.8
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 7.3e-144 514.6 407 63.1
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 7.3e-144 514.6 410 61.7
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 4.7e-143 511.9 417 61.9
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 4.7e-143 511.9 511 53.8
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 6.2e-143 511.5 406 62.3
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.2e-143 511.5 406 64.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 8.1e-143 511.1 409 62.1
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.1e-142 510.8 401 63.1
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.8e-142 510.0 416 62.0
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-142 510.0 466 57.7
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.0e-142 508.8 413 62.7
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 8.9e-142 507.7 413 60.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.2e-141 507.3 406 63.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 9.9e-141 504.2 415 61.4
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 9.2e-139 497.7 413 61.5
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 9.2e-139 497.7 407 61.9
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.2e-138 497.3 409 60.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.2e-138 497.3 400 61.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 3.5e-138 495.7 409 60.6
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 7.8e-138 494.6 406 61.3
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 7.8e-138 494.6 407 61.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.0e-137 494.2 396 63.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.3e-137 493.8 407 61.9
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 3.9e-137 492.3 406 61.1
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 5.1e-137 491.9 408 61.3
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 8.7e-137 491.1 409 60.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-136 490.7 409 59.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.1e-136 490.7 408 60.8
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 7.3e-136 488.0 407 60.2
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.3e-136 488.0 407 59.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 7.3e-136 488.0 474 55.1
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.6e-135 486.9 396 61.9
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 6.2e-135 485.0 409 59.9
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.1e-134 484.2 375 66.7
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.4e-134 483.8 406 59.9
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.8e-134 483.4 407 59.5
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.1e-134 482.6 407 59.5
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 6.9e-134 481.5 407 59.2
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.5e-133 480.3 409 59.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.4e-131 473.8 447 56.4
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.2e-131 472.6 448 56.5
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.2e-131 472.2 448 56.0
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 1.3e-129 467.2 276 85.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.5e-128 463.0 272 84.9
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.0e-126 455.7 371 61.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.3e-126 455.3 396 60.4
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 9.9e-125 451.1 345 64.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 8.4e-124 448.0 443 55.3
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.2e-123 445.7 405 57.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.8e-121 440.3 407 54.8
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 3.7e-119 432.6 374 59.6
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.3e-113 414.1 407 54.1
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 8.2e-111 404.8 328 61.6
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 5.3e-110 402.1 366 55.7
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.5e-108 395.2 290 67.6
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 4.5e-101 372.5 413 49.2
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.2e-95 351.7 317 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.3e-88 329.7 416 45.0
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 1.7e-87 327.4 420 43.8
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 4.7e-82 309.3 307 53.1
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.4e-81 307.8 265 61.9
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-78 298.1 412 42.2
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 5.3e-78 295.8 256 59.4
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 4.5e-77 292.7 220 63.2
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-75 287.0 251 60.6
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-70 270.8 203 67.5
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 5.0e-68 262.7 497 34.6
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.7e-64 249.2 387 38.5
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 4.2e-59 233.0 334 41.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.5e-43 181.4 163 58.3
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 6.8e-41 172.6 132 68.9
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.6e-37 161.4 550 25.5
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.3e-36 157.5 110 69.1
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.1e-30 136.7 104 60.6
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-29 135.2 96 66.7
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-29 134.8 96 66.7
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-29 133.7 96 65.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-29 133.7 96 65.6
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-29 133.7 96 65.6
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-28 131.7 96 64.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-28 131.3 96 64.6
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.7e-28 131.3 171 43.3
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-28 129.4 90 66.7
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.3e-27 126.7 96 61.5
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 4.7e-26 123.2 80 67.5
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-24 118.2 110 56.4
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 7.6e-24 115.9 182 39.0
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 2.2e-23 114.4 79 64.6
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.4e-23 112.8 81 65.4
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-21 108.2 67 73.1
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-21 108.2 67 73.1
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.6e-21 106.7 67 71.6
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-20 104.0 69 69.6
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.3e-19 99.4 67 70.1
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.1e-18 97.8 67 67.2
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 5.3e-17 93.2 68 55.9
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 5.3e-17 93.2 128 44.5
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-16 92.0 70 60.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.6e-16 89.4 60 68.3
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-15 87.0 156 39.1
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 7.1e-14 82.8 56 69.6
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-12 78.6 78 56.4
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.7e-12 75.9 96 43.8
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 5.3e-09 66.6 75 45.3
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 2.2e-07 61.2 44 63.6
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.9e-06 58.2 115 33.9
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 5.5e-06 56.6 58 50.0


User provided reference genes

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