Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.7e-140 500.4 264 100.0
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.0e-127 458.0 265 89.1
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-95 353.6 241 74.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 3.0e-92 342.4 265 67.5
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.0e-92 342.4 235 74.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-91 340.1 235 73.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.6e-85 318.9 237 72.2
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 8.0e-85 317.8 242 70.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-82 310.5 267 63.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.4e-81 305.1 243 68.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.7e-75 285.0 247 60.7
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.2e-73 279.3 257 59.5
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-72 276.9 295 55.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.7e-72 276.2 236 61.4
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.5e-72 275.8 218 64.7
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.6e-72 275.4 207 66.2
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 5.9e-72 275.0 196 69.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.3e-71 273.1 202 67.3
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 8.6e-71 271.2 209 66.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.5e-70 269.6 257 56.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.6e-69 266.9 219 63.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.8e-69 266.2 236 61.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 8.0e-69 264.6 229 59.8
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.4e-68 263.8 196 67.3
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.0e-68 262.3 186 70.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 4.0e-68 262.3 186 70.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 4.0e-68 262.3 239 59.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.8e-68 261.5 186 70.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.2e-67 260.8 237 57.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.0e-67 260.0 221 59.7
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.8e-67 258.5 228 61.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.8e-67 258.5 156 80.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 9.8e-67 257.7 232 57.3
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.3e-66 257.3 202 64.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.7e-66 255.8 246 54.9
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 8.3e-66 254.6 226 59.3
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.2e-65 252.7 187 70.1
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 4.1e-65 252.3 233 56.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.4e-65 251.9 257 54.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-64 250.8 212 61.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-64 250.8 255 54.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.6e-64 250.4 214 60.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.6e-64 250.4 229 56.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.0e-64 250.0 219 58.9
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.0e-64 250.0 250 57.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.7e-64 249.6 180 68.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 4.6e-64 248.8 179 69.8
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.0e-64 248.4 209 60.8
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 7.8e-64 248.1 218 61.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.8e-64 248.1 206 61.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.3e-63 247.3 206 62.1
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-63 246.5 156 74.4
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-63 246.5 156 75.0
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.3e-63 246.5 206 62.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.0e-63 246.1 183 67.2
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.0e-63 246.1 214 58.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 5.0e-63 245.4 252 53.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 6.6e-63 245.0 251 53.4
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.1e-62 244.2 201 61.7
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.5e-62 243.0 233 51.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.5e-62 243.0 197 62.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.3e-62 242.3 229 56.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.3e-62 241.5 147 78.2
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.3e-62 241.5 239 51.9
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.5e-62 241.1 152 75.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 9.5e-62 241.1 178 65.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.1e-61 240.0 252 52.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.6e-61 239.2 228 57.9
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 4.7e-61 238.8 176 68.2
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.7e-61 238.8 233 50.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 6.2e-61 238.4 182 65.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.2e-61 238.4 239 51.0
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.2e-61 238.4 195 60.0
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.1e-60 237.7 185 65.4
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.4e-60 237.3 228 57.0
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.4e-60 237.3 165 69.1
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.3e-60 236.5 182 64.3
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.3e-60 236.5 182 64.3
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.1e-60 236.1 232 53.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 4.0e-60 235.7 201 56.2
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.0e-60 235.7 241 50.6
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 5.2e-60 235.3 147 75.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.2e-60 235.3 193 62.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.8e-60 235.0 202 61.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 6.8e-60 235.0 184 64.1
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.9e-60 234.6 205 56.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.9e-60 234.6 182 65.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 8.9e-60 234.6 249 53.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.2e-59 234.2 214 54.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.2e-59 234.2 214 54.2
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.2e-59 234.2 228 53.1
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-59 234.2 201 56.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.5e-59 233.8 182 63.7
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.5e-59 233.8 227 56.8
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.0e-59 233.4 254 52.4
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.4e-59 232.6 185 63.2
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.4e-59 232.6 185 63.2
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.4e-59 232.3 185 63.2
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 5.8e-59 231.9 182 62.6
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 7.5e-59 231.5 218 55.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 7.5e-59 231.5 151 71.5
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.7e-58 230.3 158 70.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-58 230.3 203 57.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-58 230.3 275 50.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.9e-58 229.6 183 60.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.9e-58 228.8 224 53.1
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.9e-58 228.8 237 52.7
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.1e-57 227.6 151 70.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.4e-57 226.5 234 48.7
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.2e-57 226.1 151 70.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.4e-57 225.3 234 50.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.4e-57 225.3 184 60.3
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.2e-57 224.6 143 74.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.2e-56 224.2 222 50.5
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.2e-56 224.2 193 58.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.6e-56 223.8 234 48.7
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.0e-55 221.1 202 55.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.7e-55 220.3 220 53.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.3e-55 219.9 260 48.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-53 213.8 178 58.4
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.4e-52 210.7 149 66.4
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 3.1e-52 209.5 161 65.8
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.4e-49 198.7 128 70.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 7.8e-48 194.9 160 58.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.7e-47 193.7 187 52.9
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.9e-46 190.3 160 61.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 9.6e-46 188.0 165 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.1e-44 184.5 141 58.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.2e-44 182.2 139 55.4
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.7e-42 177.2 180 56.1
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-41 173.3 215 45.6
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 4.2e-41 172.6 201 50.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 4.2e-41 172.6 186 51.1
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 5.4e-41 172.2 174 56.9
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.9e-39 166.0 158 55.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.5e-38 164.1 154 57.8
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.6e-37 160.6 136 61.0
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.5e-35 154.1 146 56.8
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 4.9e-34 149.1 182 47.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.1e-33 147.9 127 59.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.7e-31 140.6 143 53.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 9.6e-30 134.8 114 62.3
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 6.9e-28 128.6 162 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 7.4e-22 108.6 79 60.8
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-21 107.5 106 56.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.4e-20 104.4 146 39.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.2e-18 97.1 129 38.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.5e-17 93.6 159 32.7
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-12 77.0 154 33.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-12 77.0 154 29.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-11 74.7 91 46.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.6e-11 73.6 122 30.3
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-10 71.6 163 29.4
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 8.5e-10 68.6 83 47.0
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-09 68.2 126 26.2
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-09 68.2 83 50.6
MCO15G027 Micromonas commoda HOM05D023681 ORTHO05D024995 5.7e-06 55.8 135 25.2


User provided reference genes

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