Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.4e-187 658.7 335 100.0
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 6.5e-148 527.7 342 81.0
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 7.1e-147 524.2 343 81.9
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 7.9e-146 520.8 342 80.1
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.1e-143 512.7 342 79.5
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.8e-142 509.6 342 79.8
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 3.8e-140 501.9 343 78.4
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.7e-135 485.3 343 77.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-108 396.0 342 64.3
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 6.5e-108 394.8 343 64.4
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.9e-107 393.3 343 62.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 7.2e-107 391.3 346 64.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.6e-106 390.2 346 63.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.0e-104 383.3 348 62.1
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 3.4e-104 382.5 343 61.5
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 5.7e-104 381.7 352 62.8
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.5e-104 381.3 347 60.2
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.3e-103 380.6 345 62.3
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 8.3e-103 377.9 290 70.0
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.8e-102 376.7 344 61.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 7.0e-102 374.8 344 62.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 7.7e-101 371.3 316 65.2
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.3e-100 370.5 272 72.1
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.7e-100 370.2 321 63.6
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 2.9e-100 369.4 343 62.7
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 3.8e-100 369.0 303 66.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 6.5e-100 368.2 252 75.4
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 6.5e-100 368.2 348 62.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 6.5e-100 368.2 321 63.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.5e-100 368.2 250 76.4
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 6.5e-100 368.2 256 74.6
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.6e-100 367.9 256 74.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.6e-100 367.9 256 74.2
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 8.6e-100 367.9 335 61.8
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.1e-99 367.5 249 76.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.1e-99 367.5 343 60.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-99 367.1 250 76.0
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-99 367.1 252 75.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.5e-99 367.1 335 62.1
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-99 367.1 342 61.1
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-99 367.1 342 59.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-99 367.1 342 59.4
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.9e-99 366.7 256 73.8
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.9e-99 366.7 303 66.0
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.9e-99 366.7 249 75.5
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.9e-99 366.7 345 61.4
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.5e-99 366.3 251 75.3
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.2e-99 365.9 256 73.8
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.2e-99 365.9 302 65.6
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 4.2e-99 365.5 343 60.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 7.2e-99 364.8 335 61.8
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 7.2e-99 364.8 251 75.7
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 9.5e-99 364.4 249 75.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.5e-99 364.4 343 62.7
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.5e-99 364.4 343 62.4
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 9.5e-99 364.4 343 62.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.2e-98 364.0 262 72.5
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.6e-98 363.6 308 64.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.6e-98 363.6 251 74.5
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.1e-98 363.2 334 62.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.8e-98 362.8 248 75.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.8e-98 362.8 342 59.6
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 3.6e-98 362.5 264 69.7
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.7e-98 362.1 246 76.8
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 6.1e-98 361.7 303 65.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.0e-98 361.3 337 60.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 8.0e-98 361.3 316 63.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.4e-97 360.5 274 70.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.4e-97 360.5 251 73.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.8e-97 360.1 314 64.0
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.0e-97 359.4 336 59.5
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.0e-97 359.4 251 74.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 3.0e-97 359.4 335 60.6
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.0e-97 359.0 334 60.5
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 4.0e-97 359.0 344 60.5
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.2e-97 358.6 337 60.8
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 5.2e-97 358.6 340 60.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.8e-97 358.2 284 66.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 6.8e-97 358.2 250 74.8
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 8.8e-97 357.8 319 61.4
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 8.8e-97 357.8 252 75.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.0e-96 356.7 251 72.5
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.6e-96 356.3 250 74.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.6e-96 356.3 270 70.4
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 3.4e-96 355.9 256 71.5
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.4e-96 355.9 244 75.4
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 7.5e-96 354.8 312 63.8
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 7.5e-96 354.8 263 69.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 7.5e-96 354.8 284 66.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-95 354.0 342 58.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.7e-95 353.6 302 64.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.7e-95 353.6 284 66.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.7e-95 352.4 342 58.2
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.9e-95 352.1 246 72.8
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-95 351.7 284 66.2
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.4e-94 350.5 253 71.5
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-94 350.5 284 65.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.1e-94 349.4 247 72.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 4.1e-94 349.0 240 73.8
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 4.1e-94 349.0 268 69.0
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 7.0e-94 348.2 344 57.6
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 9.2e-94 347.8 292 63.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.2e-93 347.4 326 59.8
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 3.5e-93 345.9 283 67.1
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.3e-92 343.2 242 73.6
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.2e-88 330.9 235 72.8
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.6e-88 329.7 351 54.7
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.6e-88 329.7 304 59.2
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 6.4e-87 325.1 359 54.6
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 8.3e-87 324.7 227 71.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.4e-86 323.9 247 67.2
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 3.3e-83 312.8 255 62.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 3.1e-81 306.2 252 64.7
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.6e-80 303.1 228 71.5
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.9e-78 297.0 320 55.6
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-75 287.3 222 65.8
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-74 284.3 341 50.7
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 8.9e-73 278.1 313 56.5
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.6e-72 276.6 205 71.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 3.4e-72 276.2 275 56.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.9e-70 270.4 287 53.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.4e-70 270.0 209 69.4
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.2e-70 269.6 234 59.0
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 4.1e-70 269.2 238 60.9
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.1e-67 261.2 218 67.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 2.5e-67 260.0 237 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.4e-64 249.2 228 56.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.5e-59 234.2 262 53.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.5e-59 233.4 133 88.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.2e-54 216.1 215 57.2
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.1e-51 208.0 229 50.7
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 6.9e-49 198.7 204 52.5
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 9.0e-49 198.4 150 66.7
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.6e-48 196.8 183 59.6
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.3e-47 194.5 134 71.6
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.6e-40 170.2 125 69.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 7.9e-37 158.7 175 52.0
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 8.7e-36 155.2 105 77.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.9e-35 154.1 134 64.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 3.3e-27 126.7 191 39.3
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 9.7e-27 125.2 88 76.1
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.1e-25 121.7 74 82.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 3.4e-24 116.7 84 69.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.1e-21 107.5 118 54.2
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 7.9e-21 105.5 206 37.4
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.5e-19 101.3 199 37.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 2.8e-18 97.1 69 76.8
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.2e-15 87.4 85 60.0
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 8.5e-15 85.5 48 81.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.7e-10 70.1 43 83.7
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.8e-09 67.8 44 72.7


User provided reference genes

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