Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.1e-84 314.7 158 100.0
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.4e-62 240.7 158 79.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.1e-52 210.3 156 69.2
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 9.1e-52 207.2 158 69.6
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 4.2e-49 198.4 157 66.9
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 9.4e-49 197.2 156 63.5
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.2e-48 196.8 156 63.5
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 4.0e-47 191.8 156 61.5
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 7.5e-46 187.6 158 59.5
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 9.8e-46 187.2 158 60.8
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 9.8e-46 187.2 156 62.8
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.2e-45 186.0 157 60.5
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.8e-45 185.7 158 59.5
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 3.7e-45 185.3 158 59.5
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 3.7e-45 185.3 158 60.1
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 3.7e-45 185.3 158 61.4
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 4.8e-45 184.9 158 60.1
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 4.8e-45 184.9 158 59.5
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.3e-45 184.5 158 58.2
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 6.3e-45 184.5 158 58.2
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 6.3e-45 184.5 156 59.0
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 8.3e-45 184.1 154 60.4
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 8.3e-45 184.1 158 60.1
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 1.1e-44 183.7 158 59.5
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.8e-44 183.0 158 60.1
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 2.4e-44 182.6 158 58.2
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.4e-44 182.6 158 57.6
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 3.1e-44 182.2 156 59.0
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 3.1e-44 182.2 158 60.1
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 4.1e-44 181.8 156 58.3
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 4.1e-44 181.8 158 60.1
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 5.4e-44 181.4 156 57.7
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 7.0e-44 181.0 157 60.5
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 9.1e-44 180.6 158 58.9
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 1.6e-43 179.9 158 58.9
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 2.0e-43 179.5 158 57.6
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 2.7e-43 179.1 156 57.7
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 3.5e-43 178.7 158 55.1
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 4.5e-43 178.3 158 57.0
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 4.5e-43 178.3 158 55.1
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 5.9e-43 177.9 158 55.7
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 5.9e-43 177.9 153 59.5
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 5.9e-43 177.9 156 59.0
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.9e-43 177.9 158 57.0
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 5.9e-43 177.9 158 57.0
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 5.9e-43 177.9 156 58.3
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 5.9e-43 177.9 158 55.7
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 7.7e-43 177.6 158 56.3
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.0e-42 177.2 157 57.3
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.0e-42 177.2 158 56.3
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.3e-42 176.8 157 56.1
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 1.7e-42 176.4 157 57.3
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.2e-42 176.0 158 57.0
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 2.2e-42 176.0 158 57.6
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.2e-42 176.0 158 55.1
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 2.9e-42 175.6 158 57.6
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 2.9e-42 175.6 158 55.7
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 6.5e-42 174.5 152 58.6
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 8.5e-42 174.1 155 58.1
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 8.5e-42 174.1 154 57.8
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 8.5e-42 174.1 154 58.4
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 1.1e-41 173.7 157 54.8
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-41 172.9 158 55.7
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-41 172.9 158 55.7
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 2.5e-41 172.6 155 57.4
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 2.5e-41 172.6 158 54.4
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.2e-41 172.2 155 58.7
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 3.2e-41 172.2 151 57.0
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 4.2e-41 171.8 154 57.8
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 5.5e-41 171.4 158 55.1
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 5.5e-41 171.4 157 54.8
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 5.5e-41 171.4 150 58.0
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 7.2e-41 171.0 154 55.8
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-40 170.2 154 57.1
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-40 170.2 154 57.1
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-40 170.2 154 57.1
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.6e-40 169.9 154 55.8
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.6e-40 169.9 154 56.5
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 2.1e-40 169.5 153 56.9
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 2.1e-40 169.5 153 56.9
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 2.7e-40 169.1 154 56.5
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.7e-40 169.1 154 55.8
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.7e-40 169.1 150 57.3
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 2.7e-40 169.1 158 57.0
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 3.6e-40 168.7 154 55.2
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 3.6e-40 168.7 154 55.2
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 3.6e-40 168.7 154 56.5
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.7e-40 168.3 154 55.8
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.7e-40 168.3 155 55.5
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 4.7e-40 168.3 172 51.7
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 6.1e-40 167.9 158 53.8
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 8.0e-40 167.5 156 55.1
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 8.0e-40 167.5 156 55.1
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 8.0e-40 167.5 154 57.1
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.0e-39 167.2 150 56.0
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.0e-39 167.2 154 57.1
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.4e-39 166.8 157 54.1
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.0e-39 165.6 150 54.7
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.0e-39 165.6 150 54.7
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 6.8e-39 164.5 148 54.7
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.5e-38 163.3 158 54.4
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 2.6e-38 162.5 158 53.8
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 2.6e-38 162.5 158 54.4
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.4e-38 162.2 151 54.3
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 4.4e-38 161.8 156 55.8
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 9.8e-38 160.6 156 54.5
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.3e-37 160.2 159 52.8
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.2e-37 159.5 150 55.3
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 8.3e-37 157.5 157 51.0
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.4e-36 156.8 157 50.3
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.0e-34 150.6 154 52.6
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 8.6e-34 147.5 158 48.7
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.7e-32 141.7 118 63.6
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 3.4e-30 135.6 129 53.5
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.3e-29 133.7 158 45.6
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 6.4e-29 131.3 161 46.0
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.8e-28 129.8 71 88.7
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.4e-28 129.4 161 44.7
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 4.1e-28 128.6 120 59.2
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 2.7e-27 125.9 150 48.0
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 5.9e-27 124.8 152 48.7
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.8e-24 115.9 74 70.3
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.7e-21 105.5 67 74.6
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.7e-21 105.5 67 74.6
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.2e-19 100.5 62 71.0
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.6e-19 100.1 86 57.0
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.7e-19 99.4 71 66.2
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.7e-19 99.4 71 64.8
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 3.5e-19 99.0 73 60.3
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 4.6e-19 98.6 62 72.6
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 4.6e-19 98.6 71 63.4
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 1.0e-18 97.4 66 66.7
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 1.3e-18 97.1 72 58.3
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.3e-18 96.3 71 63.4
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.6e-18 94.4 72 62.5
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.5e-17 93.6 70 64.3
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 3.3e-17 92.4 67 62.7
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.2e-16 90.5 73 60.3
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.8e-16 89.4 53 77.4
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.1e-15 87.4 143 34.3
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.2e-11 73.9 84 44.0
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 4.6e-11 72.0 52 65.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.0e-10 70.9 72 50.0
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 5.6e-09 65.1 141 30.5
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.5e-09 64.3 50 54.0
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.8e-07 60.1 84 35.7
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 6.8e-07 58.2 58 48.3


User provided reference genes

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