Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 9.5e-95 350.1 172 100.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 9.6e-63 243.8 162 79.6
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 2.6e-28 129.4 116 62.1
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 5.9e-28 128.3 116 62.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 1.4e-13 80.5 50 82.0
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 5.3e-13 78.6 50 80.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 5.3e-13 78.6 50 80.0
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 5.3e-13 78.6 50 80.0
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 9.1e-13 77.8 50 78.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 9.1e-13 77.8 50 78.0
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 9.1e-13 77.8 50 78.0
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 9.1e-13 77.8 50 78.0
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 1.2e-12 77.4 50 78.0
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.5e-12 77.0 49 79.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 1.5e-12 77.0 50 78.0
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 1.5e-12 77.0 49 79.6
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.5e-12 77.0 50 78.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 1.5e-12 77.0 50 78.0
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.5e-12 77.0 50 78.0
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 2.0e-12 76.6 50 78.0
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 3.4e-12 75.9 49 77.6
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 3.4e-12 75.9 50 76.0
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 3.4e-12 75.9 49 77.6
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 3.4e-12 75.9 50 76.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 4.5e-12 75.5 50 76.0
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 4.5e-12 75.5 50 76.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 4.5e-12 75.5 50 76.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 4.5e-12 75.5 50 76.0
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 4.5e-12 75.5 53 71.7
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 4.5e-12 75.5 50 76.0
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 5.9e-12 75.1 50 76.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 5.9e-12 75.1 50 76.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 5.9e-12 75.1 49 77.6
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 7.7e-12 74.7 49 75.5
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 7.7e-12 74.7 49 75.5
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 7.7e-12 74.7 50 76.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 7.7e-12 74.7 50 76.0
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 7.7e-12 74.7 50 76.0
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.0e-11 74.3 49 75.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 1.0e-11 74.3 50 74.0
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.0e-11 74.3 50 74.0
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.0e-11 74.3 50 74.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.0e-11 74.3 50 74.0
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.0e-11 74.3 50 76.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 1.0e-11 74.3 49 75.5
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 1.0e-11 74.3 49 75.5
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 1.0e-11 74.3 49 75.5
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 1.3e-11 73.9 49 75.5
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.3e-11 73.9 49 75.5
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 1.3e-11 73.9 50 74.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-11 73.9 49 75.5
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.7e-11 73.6 50 72.0
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 1.7e-11 73.6 49 75.5
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 2.2e-11 73.2 50 74.0
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.2e-11 73.2 50 74.0
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.2e-11 73.2 50 72.0
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.2e-11 73.2 49 75.5
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 2.2e-11 73.2 49 75.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 2.2e-11 73.2 49 75.5
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 74.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 74.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 74.0
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 74.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 76.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 2.9e-11 72.8 49 75.5
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 2.9e-11 72.8 49 75.5
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 72.0
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 72.0
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.9e-11 72.8 50 72.0
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 3.8e-11 72.4 50 70.0
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 5.0e-11 72.0 49 73.5
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 5.0e-11 72.0 50 72.0
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.0e-11 72.0 49 75.5
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.0e-11 72.0 49 73.5
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.5e-11 71.6 50 72.0
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 6.5e-11 71.6 49 71.4
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 6.5e-11 71.6 50 72.0
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 6.5e-11 71.6 50 74.0
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.5e-11 71.2 50 74.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 8.5e-11 71.2 49 73.5
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.1e-10 70.9 50 70.0
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.4e-10 70.5 50 70.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 2.5e-10 69.7 50 70.0
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.5e-10 69.7 48 75.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.5e-10 69.7 48 75.0
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.5e-10 69.7 50 68.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.5e-10 69.7 50 70.0
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 3.2e-10 69.3 50 70.0
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 3.2e-10 69.3 50 72.0
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 5.5e-10 68.6 50 70.0
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.2e-10 68.2 50 70.0
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.6e-09 67.0 50 68.0
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.7e-09 66.2 40 77.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 4.7e-09 65.5 50 68.0
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.0e-08 64.3 50 62.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.4e-08 63.9 49 65.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.8e-08 63.5 49 63.3
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 2.3e-08 63.2 41 78.0
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.7e-07 58.5 52 63.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 8.2e-06 54.7 50 60.0


User provided reference genes

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