Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.3e-116 420.2 215 100.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.3e-88 327.8 208 84.6
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.2e-83 313.5 202 82.2
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 8.0e-83 310.8 208 77.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.3e-82 309.3 208 77.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 8.8e-82 307.4 208 76.9
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.0e-81 306.2 208 76.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 4.8e-80 301.6 208 76.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 7.0e-79 297.7 208 75.0
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.9e-78 294.7 208 75.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.3e-77 293.5 208 75.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.3e-77 293.5 208 75.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.3e-77 293.5 208 73.1
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 2.9e-77 292.4 208 73.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.8e-77 292.0 208 72.6
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 6.5e-77 291.2 208 74.0
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 8.5e-77 290.8 208 73.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.5e-76 290.0 208 72.1
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.2e-76 288.9 208 72.6
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 7.2e-76 287.7 218 68.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.2e-76 287.7 208 72.6
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 9.4e-76 287.3 205 73.7
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.6e-75 286.6 201 73.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 6.1e-75 284.6 208 70.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.0e-74 283.9 208 72.1
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.4e-74 283.5 205 72.7
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.4e-74 283.5 210 71.9
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.8e-74 283.1 208 70.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.8e-74 283.1 208 70.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.2e-74 281.6 208 70.2
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.2e-73 280.4 201 72.6
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.5e-73 280.0 205 73.2
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 2.6e-73 279.3 211 70.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.6e-73 279.3 205 71.2
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 5.7e-73 278.1 206 72.3
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 9.8e-73 277.3 202 70.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.3e-72 276.9 205 70.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.7e-72 276.6 202 70.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.7e-72 276.6 202 70.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.7e-72 276.6 202 69.8
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.2e-72 276.2 202 69.3
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 6.3e-72 274.6 206 69.4
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 6.3e-72 274.6 205 70.2
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 8.3e-72 274.2 206 69.4
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.1e-71 273.9 205 69.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.1e-71 273.9 208 68.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.4e-71 273.5 208 70.7
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.1e-71 272.3 202 69.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.1e-71 272.3 208 68.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.1e-71 272.3 208 67.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.1e-71 271.9 208 68.3
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 4.1e-71 271.9 205 69.3
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.1e-71 271.9 205 68.8
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 5.4e-71 271.6 208 69.7
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 5.4e-71 271.6 209 70.3
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.0e-71 271.2 202 68.8
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 9.1e-71 270.8 198 72.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 9.1e-71 270.8 210 68.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-70 270.4 202 69.3
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-70 270.4 202 68.8
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-70 270.0 202 68.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-70 270.0 202 68.8
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.6e-70 270.0 202 68.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.6e-70 270.0 210 68.6
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 2.0e-70 269.6 206 68.4
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.0e-70 269.6 198 70.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.5e-70 268.9 206 69.9
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.5e-70 268.5 207 67.1
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.2e-69 266.2 209 67.9
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.8e-69 265.4 205 67.8
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 6.5e-69 264.6 254 59.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 8.5e-69 264.2 203 66.5
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.5e-68 263.5 279 55.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.5e-68 262.7 208 68.3
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.2e-68 262.3 205 66.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 4.2e-68 261.9 199 70.4
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 9.4e-68 260.8 205 64.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.6e-67 258.8 208 63.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.7e-67 258.5 202 65.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 4.0e-66 255.4 208 63.0
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.2e-64 249.6 173 74.6
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.7e-64 248.8 170 74.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.4e-63 246.1 210 60.0
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.4e-63 246.1 202 63.4
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 5.4e-63 245.0 166 76.5
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.6e-62 243.4 178 70.2
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.3e-61 240.4 207 66.2
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.3e-61 240.4 207 66.2
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.3e-61 239.6 199 63.8
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 2.9e-61 239.2 203 62.1
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.9e-61 239.2 223 59.6
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.8e-61 238.8 187 69.5
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.0e-61 238.4 201 61.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 5.0e-61 238.4 159 78.0
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.5e-60 236.9 178 68.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.5e-60 236.9 211 60.2
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.9e-60 236.5 192 65.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-60 235.7 176 69.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 7.3e-60 234.6 175 70.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.5e-60 234.2 189 63.0
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.2e-59 233.8 205 64.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.1e-59 231.5 170 68.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.0e-59 231.1 174 66.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 3.4e-57 225.7 189 62.4
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-56 223.4 196 59.2
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.7e-56 223.4 196 59.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.7e-56 222.2 196 58.7
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 3.7e-56 222.2 196 58.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-55 220.3 196 58.7
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 3.2e-55 219.2 161 65.8
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.5e-52 209.5 196 56.6
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 8.0e-51 204.5 189 55.0
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.0e-50 204.1 185 56.2
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.2e-49 200.7 203 52.2
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.0e-49 199.9 197 52.3
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 3.7e-48 195.7 191 55.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.1e-47 194.1 138 72.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.0e-47 191.4 132 74.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 7.8e-46 188.0 139 71.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.3e-45 187.2 196 51.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.3e-45 187.2 178 56.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.9e-40 169.5 169 55.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 4.1e-39 165.6 125 68.8
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 9.2e-39 164.5 119 73.9
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 4.6e-38 162.2 123 69.9
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 8.6e-37 157.9 116 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.5e-33 147.1 132 57.6
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 9.2e-31 137.9 88 81.8
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.0e-29 132.9 101 67.3
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 6.6e-29 131.7 159 47.2
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 4.9e-24 115.5 199 34.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 8.4e-24 114.8 78 73.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.2e-23 112.8 101 60.4
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 4.2e-23 112.5 68 80.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 6.0e-22 108.6 208 38.0
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.9e-21 105.9 111 56.8
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 5.6e-20 102.1 210 33.8
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.8e-19 99.8 171 39.8
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.2e-17 94.4 88 56.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.4e-17 92.8 64 73.4
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 7.6e-17 91.7 63 73.0
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.7e-16 90.5 62 74.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.7e-16 90.5 189 31.2
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 3.8e-16 89.4 52 82.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 5.4e-15 85.5 203 32.0
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 5.4e-15 85.5 203 32.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.2e-14 84.3 51 78.4
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.5e-12 76.6 48 70.8
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 9.6e-12 74.7 89 43.8
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 5.3e-10 68.9 56 60.7
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.0e-09 67.0 50 60.0
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.6e-09 66.6 189 28.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 1.2e-06 57.8 51 64.7


User provided reference genes

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