Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.0e-84 315.5 266 100.0
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.3e-82 307.8 192 95.8
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-81 307.4 192 95.8
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 7.3e-78 294.7 192 93.8
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.2e-76 288.5 266 89.8
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-74 283.9 193 92.7
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.2e-74 283.1 192 91.1
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.2e-74 283.1 192 90.6
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.6e-69 266.9 192 87.5
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 3.1e-68 262.7 194 86.1
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.3e-66 257.3 155 87.7
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 8.4e-66 254.6 191 78.5
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 6.0e-64 248.4 181 82.3
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 6.0e-64 248.4 193 76.2
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 6.0e-64 248.4 181 85.6
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.0e-63 247.7 153 86.9
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.3e-63 247.3 198 79.3
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.7e-63 246.9 191 83.8
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.3e-63 246.5 152 86.2
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.0e-63 246.1 195 77.4
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 6.6e-63 245.0 191 83.2
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 8.7e-63 244.6 155 85.2
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 1.5e-62 243.8 188 85.1
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.3e-62 242.7 190 76.8
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.6e-62 241.9 152 85.5
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 7.3e-62 241.5 196 78.1
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.3e-61 240.7 186 75.3
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 1.6e-61 240.4 191 77.5
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 2.8e-61 239.6 156 83.3
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.8e-61 239.6 155 83.2
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 6.2e-61 238.4 146 85.6
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.1e-60 237.7 191 72.3
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.1e-60 237.7 155 83.9
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.1e-60 237.7 190 83.2
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.4e-60 237.3 153 85.6
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 2.4e-60 236.5 193 77.2
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 2.4e-60 236.5 191 77.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.4e-60 236.5 191 78.0
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 3.1e-60 236.1 190 72.1
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 4.0e-60 235.7 190 79.5
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 6.9e-60 235.0 150 84.7
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.5e-59 233.8 193 78.2
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 2.0e-59 233.4 190 81.1
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 2.0e-59 233.4 193 75.6
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.0e-59 233.4 192 76.0
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 3.4e-59 232.6 155 80.0
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 4.5e-59 232.3 192 72.9
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 5.8e-59 231.9 148 85.1
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 9.9e-59 231.1 198 71.7
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.7e-58 230.3 191 73.8
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.7e-58 230.3 154 82.5
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.7e-58 230.3 148 84.5
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.9e-58 229.6 153 81.0
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.8e-58 229.2 190 78.4
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 6.4e-58 228.4 147 82.3
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.1e-57 227.6 191 79.1
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.1e-57 227.6 190 76.8
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-57 227.3 186 78.0
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.9e-57 226.9 144 84.7
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 3.2e-57 226.1 154 77.9
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.2e-57 226.1 190 78.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.2e-57 225.7 152 80.9
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 5.4e-57 225.3 194 70.1
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 7.1e-57 224.9 185 72.4
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 9.3e-57 224.6 190 80.5
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.2e-56 224.2 153 79.7
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.2e-56 224.2 149 82.6
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.6e-56 223.8 191 70.2
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 3.5e-56 222.6 193 68.4
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 3.5e-56 222.6 190 77.9
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.9e-56 221.5 144 82.6
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.9e-56 221.5 144 82.6
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 2.3e-55 219.9 154 80.5
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 3.0e-55 219.5 157 78.3
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.0e-55 219.5 190 80.0
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.9e-55 219.2 154 80.5
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 3.9e-55 219.2 149 81.2
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 3.9e-55 219.2 148 79.7
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 5.1e-55 218.8 149 80.5
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 6.7e-55 218.4 156 76.9
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 8.7e-55 218.0 149 78.5
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 1.5e-54 217.2 152 78.3
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.9e-54 216.9 188 67.6
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 3.3e-54 216.1 143 81.1
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 3.3e-54 216.1 156 76.9
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.3e-54 215.7 152 78.3
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 5.6e-54 215.3 153 78.4
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.6e-54 215.3 148 79.1
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.4e-54 214.9 155 78.7
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 1.6e-53 213.8 145 80.7
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.6e-53 213.8 142 81.0
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 2.8e-53 213.0 142 80.3
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 6.2e-53 211.8 184 76.1
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 191 67.0
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.4e-52 209.9 145 79.3
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.4e-52 209.9 145 79.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.1e-52 209.5 153 75.8
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.1e-52 209.5 116 98.3
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.3e-52 208.8 194 74.7
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 2.0e-51 206.8 134 82.8
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.0e-51 206.8 150 77.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.0e-51 206.8 132 87.9
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 3.4e-51 206.1 150 77.3
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.4e-51 206.1 153 76.5
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.4e-51 206.1 153 76.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 3.4e-51 206.1 133 85.0
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 7.6e-51 204.9 138 84.8
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 7.6e-51 204.9 134 85.8
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 9.9e-51 204.5 133 85.7
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.7e-50 203.8 150 76.7
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 2.2e-50 203.4 173 69.4
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 2.2e-50 203.4 137 81.8
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 3.8e-50 202.6 171 69.6
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.8e-50 202.6 166 72.3
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 3.8e-50 202.6 166 72.3
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.8e-50 202.6 138 78.3
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 4.9e-50 202.2 138 77.5
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 6.4e-50 201.8 150 76.7
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 8.4e-50 201.4 150 76.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 8.4e-50 201.4 150 76.0
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-48 197.6 194 71.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.2e-48 197.6 194 71.1
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.2e-48 197.6 135 80.0
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 2.7e-48 196.4 132 83.3
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 3.5e-48 196.1 150 74.7
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 4.6e-48 195.7 141 77.3
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 6.0e-48 195.3 137 78.8
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 7.9e-48 194.9 199 69.8
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.8e-47 193.7 164 67.7
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.0e-47 193.0 138 77.5
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.1e-44 184.5 192 69.8
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.4e-44 183.3 136 75.7
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.7e-42 177.2 138 68.1
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.4e-41 174.1 154 68.8
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.9e-41 173.7 152 65.1
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.3e-39 166.8 135 68.9
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 6.7e-39 165.2 192 66.1
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.4e-36 157.5 121 74.4
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 3.8e-34 149.4 136 64.7
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 8.5e-34 148.3 198 56.6
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.4e-33 147.5 130 63.1
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 9.7e-30 134.8 118 62.7
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 2.8e-29 133.3 99 72.7
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 2.2e-26 123.6 86 86.0
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.9e-26 123.2 112 62.5
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.4e-25 120.9 143 51.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 1.9e-25 120.6 140 53.6
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.6e-24 117.5 79 69.6
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.4e-22 109.4 144 52.1
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-21 107.8 75 81.3
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.6e-19 100.1 83 69.9
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.3e-18 97.8 69 81.2
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.3e-18 97.8 69 81.2
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.8e-13 80.1 66 80.3
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.4e-12 77.0 64 78.1
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 1.7e-10 70.9 44 79.5
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 8.8e-07 58.5 60 46.7


User provided reference genes

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