Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.0e-110 400.6 197 100.0
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.2e-103 379.0 197 93.4
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.1e-99 366.7 197 89.8
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 4.7e-98 361.3 195 88.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 6.1e-98 360.9 195 88.2
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 8.9e-97 357.1 193 88.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.5e-88 329.7 196 79.6
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.7e-84 316.2 194 77.8
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.3e-83 310.8 194 74.2
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.6e-82 308.5 189 77.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.4e-81 306.6 193 75.6
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 6.8e-81 304.3 192 74.0
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 8.9e-81 303.9 193 72.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.2e-80 303.5 190 75.3
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 4.4e-80 301.6 195 72.3
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.3e-79 300.1 193 74.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.4e-78 296.6 191 72.3
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.9e-78 296.2 183 78.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.4e-78 295.8 188 73.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.4e-78 294.7 188 73.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.6e-77 293.1 194 70.6
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.6e-77 293.1 189 72.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 4.6e-77 291.6 196 70.4
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 6.0e-77 291.2 193 71.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.0e-76 290.4 195 71.3
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 8.6e-76 287.3 187 73.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.1e-75 287.0 191 70.2
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.9e-75 286.2 190 71.6
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 3.3e-75 285.4 191 71.7
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.3e-75 285.4 196 69.4
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.3e-75 285.0 199 69.8
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 4.3e-75 285.0 191 70.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.3e-75 284.3 187 72.7
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 9.6e-75 283.9 190 71.6
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.6e-74 283.1 192 71.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 4.7e-74 281.6 184 72.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 2.4e-73 279.3 189 70.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.4e-73 279.3 191 68.1
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 5.2e-73 278.1 188 71.3
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.2e-72 276.9 189 69.3
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.0e-72 276.2 191 69.1
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.6e-72 275.8 192 69.8
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.6e-72 275.8 167 77.2
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 4.4e-72 275.0 188 72.3
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.4e-72 275.0 189 68.8
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.8e-72 274.6 198 66.7
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 7.6e-72 274.2 192 69.8
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 7.6e-72 274.2 191 68.1
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 7.6e-72 274.2 191 68.1
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 9.9e-72 273.9 167 76.6
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.2e-71 272.7 196 68.9
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.2e-71 272.7 177 76.8
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 3.8e-71 271.9 191 69.6
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 4.9e-71 271.6 192 68.2
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 6.4e-71 271.2 191 70.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.4e-71 270.8 203 64.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.4e-71 270.8 191 67.5
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.9e-70 269.6 193 70.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.9e-70 269.6 196 67.9
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.9e-70 269.6 192 65.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 3.2e-70 268.9 191 70.2
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.2e-70 268.5 195 67.2
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 7.1e-70 267.7 202 66.8
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 7.1e-70 267.7 187 70.1
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 9.3e-70 267.3 192 68.2
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-69 266.9 191 69.6
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.2e-69 266.9 185 69.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.7e-69 265.8 192 68.2
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 2.7e-69 265.8 191 69.1
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 2.7e-69 265.8 191 67.5
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.5e-69 265.4 181 72.9
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 4.6e-69 265.0 191 69.1
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 4.6e-69 265.0 191 69.1
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 7.8e-69 264.2 193 69.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.0e-68 263.8 188 68.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.3e-68 262.7 198 63.1
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 3.0e-68 262.3 191 69.1
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 6.6e-68 261.2 175 75.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.1e-67 260.4 187 67.4
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.1e-67 260.4 199 64.8
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 9.6e-67 257.3 187 66.8
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 5.3e-65 251.5 188 64.4
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.1e-62 243.8 194 62.9
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.2e-62 241.9 183 62.8
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 5.4e-62 241.5 186 61.8
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 6.0e-61 238.0 177 65.5
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 6.0e-61 238.0 179 62.0
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.2e-58 228.0 165 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.0e-57 225.3 187 58.8
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.0e-56 223.0 146 69.9
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 7.9e-53 211.1 149 69.8
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 4.8e-50 201.8 182 56.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.4e-49 200.3 185 56.2
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 2.0e-48 196.4 197 52.8
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.3e-47 193.7 110 78.2
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.2e-45 187.2 189 51.9
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 6.7e-36 154.8 84 92.9
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.9e-35 153.3 104 68.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-32 142.1 88 76.1
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 3.0e-28 129.4 79 77.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 4.8e-26 122.1 82 73.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.1e-21 106.7 92 57.6
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 7.9e-21 104.8 77 66.2
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 7.9e-21 104.8 77 66.2
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 5.1e-20 102.1 158 43.0
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.3e-19 99.4 92 52.2
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 3.7e-18 95.9 72 65.3
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.9e-12 75.9 179 29.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.7e-12 75.1 159 29.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 5.7e-11 72.0 172 30.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 5.7e-11 72.0 171 31.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 5.7e-11 72.0 172 32.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 5.7e-11 72.0 170 29.4
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 9.7e-11 71.2 175 31.4
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 9.7e-11 71.2 184 27.7
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.8e-10 69.7 49 63.3
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.7e-10 69.3 166 28.9
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 1.1e-09 67.8 173 30.1
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.8e-09 67.0 174 31.6
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.4e-09 66.6 175 28.6
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.1e-09 66.2 173 28.9
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 3.1e-09 66.2 177 26.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 5.3e-09 65.5 178 28.1
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.3e-09 65.5 168 29.2
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.3e-09 65.5 168 29.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 7.0e-09 65.1 190 26.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.1e-09 64.7 187 27.3
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.2e-08 64.3 172 28.5
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.2e-08 64.3 176 29.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.2e-08 64.3 160 29.4
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.0e-08 63.5 172 29.7
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.6e-08 63.2 173 28.3
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 2.6e-08 63.2 171 28.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.6e-08 63.2 172 29.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 5.9e-08 62.0 172 26.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.0e-07 61.2 177 28.2
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.3e-07 60.8 173 24.9
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-07 60.8 148 29.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.3e-07 60.8 167 27.5
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.2e-07 60.1 173 24.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 3.8e-07 59.3 176 26.1
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.0e-07 58.9 135 31.9
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 5.0e-07 58.9 165 26.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 6.5e-07 58.5 165 27.9
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.5e-07 58.2 167 25.7
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.1e-06 57.8 177 27.7
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-06 57.8 145 26.9
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.5e-06 57.4 191 26.7
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.5e-06 57.4 111 37.8
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.2e-06 56.2 175 28.0
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 4.2e-06 55.8 98 33.7
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.5e-06 55.5 167 26.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 9.4e-06 54.7 145 28.3


User provided reference genes

Program Settings