Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.8e-156 555.1 339 100.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.6e-116 421.0 317 87.7
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 4.6e-109 398.7 366 74.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.6e-109 398.7 357 75.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.6e-106 390.2 367 72.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 7.6e-104 381.3 343 75.2
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 9.9e-104 380.9 345 76.2
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.4e-102 376.3 343 75.5
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 9.6e-99 364.4 339 73.5
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.8e-96 355.1 355 69.0
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.6e-96 354.8 355 69.0
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 9.9e-96 354.4 330 75.5
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.7e-95 353.6 342 72.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.2e-95 353.2 344 70.9
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.9e-95 352.8 342 72.8
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 4.9e-95 352.1 349 69.9
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 4.9e-95 352.1 349 69.9
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.1e-94 350.9 343 70.8
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 4.2e-94 349.0 353 69.7
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.1e-94 348.2 345 71.9
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.1e-94 348.2 351 68.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 9.3e-94 347.8 339 71.4
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.6e-93 347.1 341 71.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.7e-93 346.3 330 72.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 3.5e-93 345.9 363 68.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.5e-93 345.9 341 70.1
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.6e-93 345.5 343 69.4
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 7.8e-93 344.7 341 70.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.7e-92 343.6 342 71.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.3e-92 343.2 356 69.1
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.0e-92 342.8 339 70.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.1e-92 342.0 340 71.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.1e-92 342.0 343 71.4
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 6.6e-92 341.7 370 65.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 8.7e-92 341.3 349 69.3
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.7e-92 341.3 346 70.5
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.5e-91 340.5 343 67.9
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.5e-91 340.5 345 69.3
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.3e-91 339.3 343 70.8
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 5.6e-91 338.6 374 63.9
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.6e-90 337.0 351 68.9
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 8.1e-90 334.7 341 69.2
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.8e-89 333.6 351 68.9
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.4e-89 333.2 346 69.1
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-88 330.1 339 71.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 3.4e-88 329.3 344 67.4
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 5.8e-88 328.6 343 68.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 5.8e-88 328.6 339 70.8
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.3e-87 327.4 351 66.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.8e-87 325.9 375 64.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 6.4e-87 325.1 380 63.9
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.4e-86 323.9 353 59.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.4e-86 323.2 339 69.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.2e-86 322.8 397 48.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.2e-85 320.9 342 67.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.1e-85 320.1 326 69.9
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 3.5e-85 319.3 338 69.2
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.6e-85 318.9 346 67.1
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.0e-84 316.2 341 66.3
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 5.1e-84 315.5 298 73.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.1e-84 315.5 337 65.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 6.7e-84 315.1 347 64.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.5e-83 313.9 349 63.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.5e-83 313.9 298 72.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 2.5e-83 313.2 348 65.8
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 5.6e-83 312.0 347 64.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.3e-82 310.8 349 63.9
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 4.8e-82 308.9 343 64.7
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.8e-81 307.0 347 64.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.8e-81 307.0 337 61.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 3.1e-81 306.2 357 62.7
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.1e-81 306.2 339 65.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 5.3e-81 305.4 349 63.6
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.5e-80 303.9 338 61.5
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.0e-80 303.5 340 63.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.0e-80 303.5 288 72.6
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.2e-79 300.1 327 66.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.9e-79 299.7 334 63.8
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.1e-78 297.7 236 67.8
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 5.5e-78 295.4 349 61.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.7e-77 293.1 300 71.7
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 3.5e-77 292.7 339 63.4
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.3e-76 290.0 338 56.8
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.9e-75 287.0 351 59.8
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.5e-75 286.6 345 62.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.6e-75 284.6 247 61.1
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.3e-73 278.9 226 61.9
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.6e-72 276.6 337 62.3
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.5e-72 275.8 247 59.1
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.9e-71 273.1 222 64.9
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.5e-70 268.9 334 59.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 5.5e-70 268.9 293 58.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.3e-68 264.2 339 55.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.8e-68 263.8 336 59.8
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 5.7e-67 258.8 336 58.6
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 7.4e-67 258.5 313 65.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.3e-66 257.7 219 60.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-65 254.6 421 51.5
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.1e-65 254.6 358 59.2
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.1e-65 253.1 334 59.0
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 5.9e-64 248.8 336 58.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.7e-63 247.3 340 57.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.5e-63 245.0 336 57.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 9.4e-62 241.5 292 61.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 7.9e-61 238.4 179 68.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.0e-60 236.5 237 75.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-60 236.5 363 40.2
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.0e-60 236.5 294 49.7
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.8e-60 235.0 350 55.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.5e-59 234.2 165 69.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.7e-58 230.7 336 56.2
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-54 216.5 336 54.8
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 5.9e-48 195.7 276 59.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 6.5e-47 192.2 286 58.0
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.6e-45 187.6 194 80.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.1e-45 187.2 241 67.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.4e-44 184.5 194 79.4
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.3e-43 179.9 178 54.5
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 3.1e-41 173.3 199 49.2
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.3e-39 167.9 214 42.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.8e-33 147.5 117 59.0
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.4e-33 147.1 279 50.2
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 8.0e-29 132.1 159 79.2
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 3.0e-28 130.2 286 48.3
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.0e-28 129.8 207 41.1
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-26 124.0 205 40.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-24 118.2 185 40.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 6.1e-21 105.9 85 57.6
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.0e-20 103.2 151 75.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.4e-19 100.1 112 50.9
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 5.7e-19 99.4 107 47.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-16 91.7 81 58.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.8e-16 89.0 126 81.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 8.6e-15 85.5 65 63.1
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 9.5e-14 82.0 132 61.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-11 74.3 125 78.4
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.3e-07 61.6 56 53.6
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.0e-07 59.7 40 65.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 3.3e-06 57.0 55 52.7


User provided reference genes

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