Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-254 882.9 452 100.0
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.7e-200 701.0 477 79.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 3.6e-133 479.2 504 58.1
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.7e-122 443.7 572 49.5
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.7e-122 442.6 505 55.4
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.3e-116 423.3 572 48.4
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 6.7e-116 421.8 537 51.0
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.0e-115 420.2 537 50.8
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 3.3e-115 419.5 545 49.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 7.4e-115 418.3 534 50.7
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.3e-114 417.5 537 50.5
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.7e-111 407.1 507 52.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 8.2e-106 388.3 454 54.8
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.1e-105 387.9 498 49.8
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.0e-103 381.3 510 48.2
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 5.0e-103 379.0 515 47.6
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 5.0e-103 379.0 516 47.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.5e-102 377.5 523 47.4
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.9e-102 377.1 542 46.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.5e-102 376.7 523 47.2
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.2e-102 376.3 523 47.2
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 4.2e-102 375.9 555 45.4
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 5.5e-102 375.6 528 46.2
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.2e-101 374.4 559 44.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.2e-101 374.4 516 47.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 4.0e-100 369.4 534 46.6
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 2.0e-99 367.1 551 44.6
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 4.4e-99 365.9 553 42.9
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 5.7e-99 365.5 553 44.7
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 9.8e-99 364.8 515 45.6
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.8e-98 363.2 506 46.4
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 6.3e-98 362.1 544 43.8
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.8e-97 360.5 519 46.4
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 4.1e-97 359.4 547 43.7
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.4e-97 359.0 551 43.7
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.0e-97 358.6 509 45.0
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 7.0e-97 358.6 552 42.6
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.2e-96 357.8 441 51.9
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.6e-96 357.5 522 45.2
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.6e-96 357.5 527 45.0
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 5.9e-96 355.5 546 43.4
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 7.7e-96 355.1 514 44.4
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.0e-95 354.8 514 44.6
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.3e-95 354.4 511 45.2
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.9e-95 353.2 517 44.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 6.6e-95 352.1 513 46.2
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.5e-94 350.9 555 43.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.5e-94 350.9 544 43.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 3.3e-94 349.7 548 42.7
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 4.2e-94 349.4 547 42.4
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 4.2e-94 349.4 562 43.4
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 9.5e-94 348.2 541 42.5
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.2e-93 347.8 545 43.3
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.8e-93 346.7 542 42.6
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 4.7e-93 345.9 523 43.8
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 6.1e-93 345.5 555 43.6
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 6.1e-93 345.5 561 41.7
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 8.0e-93 345.1 546 43.6
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.0e-92 344.7 515 44.5
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.0e-92 344.7 559 41.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.0e-92 344.7 559 43.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.4e-92 344.4 523 44.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 2.3e-92 343.6 560 42.1
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.2e-92 342.4 536 43.5
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.2e-92 342.4 543 42.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 2.0e-91 340.5 455 48.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 2.0e-91 340.5 482 45.4
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.6e-91 340.1 534 43.3
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 3.4e-91 339.7 557 42.9
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 4.4e-91 339.3 538 42.6
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 4.4e-91 339.3 530 43.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 4.4e-91 339.3 497 44.9
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 9.8e-91 338.2 516 43.4
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.7e-90 337.4 560 42.3
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.2e-90 337.0 519 42.6
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.1e-89 334.7 563 40.7
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.8e-89 334.0 512 43.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.1e-89 332.8 523 43.2
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 9.2e-89 331.6 511 43.1
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.6e-88 330.9 507 43.6
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.6e-88 330.9 508 43.3
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 4.5e-88 329.3 504 44.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 4.5e-88 329.3 543 41.6
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 5.9e-88 328.9 551 41.4
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 7.8e-88 328.6 508 43.3
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.7e-87 327.4 531 42.6
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.7e-87 327.4 557 40.8
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.3e-87 327.0 508 43.3
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 8.6e-87 325.1 528 42.4
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.5e-86 324.3 506 43.5
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 3.3e-86 323.2 453 45.3
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.3e-86 322.8 469 44.1
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 4.3e-86 322.8 532 43.0
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.6e-85 319.7 441 45.1
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 4.7e-85 319.3 528 42.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.0e-84 318.2 476 43.3
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.6e-83 313.5 466 42.5
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 4.4e-83 312.8 432 46.5
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 4.4e-83 312.8 551 40.3
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 4.4e-83 312.8 523 42.3
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.3e-82 311.2 608 38.8
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 9.2e-81 305.1 571 38.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.1e-78 298.1 507 41.2
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 6.2e-77 292.4 383 48.0
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.3e-76 290.4 510 40.8
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.4e-75 286.2 355 50.1
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 7.8e-72 275.4 405 43.2
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.3e-71 273.9 376 45.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.5e-70 270.4 458 40.0
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.6e-64 251.1 375 45.9
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 2.1e-64 250.8 467 36.8
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.6e-59 233.8 495 34.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 3.3e-54 216.9 433 35.1
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 5.6e-54 216.1 433 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.6e-45 188.0 461 31.5
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.9e-41 174.5 170 55.9
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 7.9e-32 142.5 261 37.5
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.0e-31 142.1 260 36.9
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 6.2e-29 132.9 169 49.1
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.4e-28 131.0 196 43.4
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 2.8e-21 107.5 138 49.3
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 3.1e-20 104.0 95 57.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.3e-20 103.2 126 49.2
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 2.0e-19 101.3 292 29.8
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.2e-18 97.8 128 46.1
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 4.3e-14 83.6 113 41.6
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.4e-14 82.8 106 45.3
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.7e-10 71.6 101 42.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.6e-08 65.1 105 42.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 6.1e-08 63.2 130 39.2
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-06 58.9 48 62.5
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-06 58.9 57 54.4
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 4.4e-06 57.0 138 38.4


User provided reference genes

Program Settings