Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.6e-135 484.6 245 100.0
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.6e-103 378.3 201 97.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 3.9e-86 322.0 196 83.2
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 7.7e-82 307.8 199 77.9
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 2.5e-80 302.8 197 77.2
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 9.4e-80 300.8 197 76.6
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.4e-78 297.0 216 72.7
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 3.0e-78 295.8 194 78.4
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 9.7e-77 290.8 200 74.5
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 2.2e-76 289.7 189 77.8
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.6e-74 283.5 186 76.9
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 2.0e-74 283.1 190 75.8
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 4.5e-74 282.0 192 75.5
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.2e-73 279.6 194 75.3
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 6.5e-73 278.1 196 73.5
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.1e-72 277.3 188 76.1
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.5e-72 276.9 188 76.1
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 2.5e-72 276.2 198 74.2
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 4.2e-72 275.4 186 76.9
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 4.2e-72 275.4 186 75.8
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.6e-71 273.5 186 75.8
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 2.7e-71 272.7 210 67.6
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 2.7e-71 272.7 172 78.5
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.6e-71 272.3 194 72.2
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.7e-71 271.9 186 75.3
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 6.1e-71 271.6 193 73.1
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.0e-71 271.2 189 73.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.0e-71 271.2 189 73.0
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 8.0e-71 271.2 186 74.7
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.0e-70 270.8 194 71.6
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.4e-70 270.4 194 71.6
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 1.8e-70 270.0 186 75.8
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 2.3e-70 269.6 172 80.8
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.0e-70 268.9 186 74.7
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 4.0e-70 268.9 215 67.4
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 6.7e-70 268.1 194 70.6
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.0e-69 266.5 194 71.6
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.3e-69 265.8 186 73.1
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.3e-69 265.8 194 71.6
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 5.7e-69 265.0 190 70.5
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 7.5e-69 264.6 191 70.2
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.3e-68 263.8 189 70.4
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.3e-68 263.8 193 69.4
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.3e-68 263.8 186 73.1
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.2e-68 263.1 189 69.8
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.2e-68 263.1 191 69.6
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 2.8e-68 262.7 186 70.4
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 2.8e-68 262.7 194 70.1
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.8e-68 261.9 185 72.4
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.8e-68 261.9 188 72.9
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.1e-67 260.8 190 70.0
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.1e-67 260.8 214 65.0
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.8e-67 260.0 172 77.9
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.4e-67 259.6 189 69.3
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 2.4e-67 259.6 194 70.6
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 2.4e-67 259.6 190 70.5
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 2.4e-67 259.6 197 67.0
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 3.1e-67 259.2 191 69.1
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 4.1e-67 258.8 189 68.8
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 5.3e-67 258.5 204 66.2
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 7.0e-67 258.1 191 68.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 9.1e-67 257.7 207 65.2
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 9.1e-67 257.7 194 69.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 2.0e-66 256.5 190 68.4
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 2.7e-66 256.1 208 64.9
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 4.5e-66 255.4 211 64.0
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 5.9e-66 255.0 199 66.8
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 7.7e-66 254.6 208 64.4
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.0e-65 254.2 192 70.8
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.7e-65 253.4 208 63.9
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.2e-65 253.1 186 68.8
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 2.2e-65 253.1 190 70.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 2.2e-65 253.1 190 70.0
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-65 252.7 174 71.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-65 252.7 174 73.0
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 8.5e-65 251.1 185 68.1
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 8.5e-65 251.1 211 63.0
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 8.5e-65 251.1 174 72.4
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 7.2e-64 248.1 278 54.3
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 9.4e-64 247.7 172 72.7
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 3.6e-63 245.7 194 64.9
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.4e-62 243.8 197 63.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-62 243.0 189 65.6
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 3.0e-62 242.7 188 66.0
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.0e-62 242.3 184 66.3
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 4.0e-62 242.3 203 65.5
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.5e-61 240.4 200 62.5
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.7e-60 236.9 281 50.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.8e-60 236.1 160 75.0
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.7e-60 235.7 201 63.2
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.0e-58 229.9 168 71.4
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 7.7e-58 228.0 208 58.7
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.1e-56 224.2 186 61.8
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.5e-56 223.0 187 62.0
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 5.5e-56 221.9 187 61.5
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.8e-54 216.9 186 59.7
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.6e-53 213.0 184 58.2
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.2e-52 209.9 138 73.2
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.7e-52 209.1 186 57.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.3e-52 208.4 186 57.0
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.1e-47 193.4 168 62.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 2.1e-47 193.4 158 63.9
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 4.7e-47 192.2 155 63.9
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.4e-45 186.0 151 62.9
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 5.8e-37 158.7 92 84.8
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 3.2e-35 152.9 164 54.3
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 9.2e-35 151.4 164 53.0
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-33 146.4 164 51.8
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.5e-32 144.1 145 51.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.4e-30 137.5 93 71.0
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.8e-29 132.1 134 58.2
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.6e-26 124.0 79 74.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.6e-26 122.5 78 74.4
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.7e-25 120.6 74 77.0
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.0e-25 119.8 79 72.2
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 1.1e-19 101.3 61 78.7
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 3.2e-19 99.8 61 77.0
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 9.2e-19 98.2 90 62.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.7e-17 94.0 230 34.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 3.6e-15 86.3 77 55.8
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.2e-15 85.5 54 75.9
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 3.0e-09 66.6 36 83.3
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.5e-08 64.3 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.3e-07 61.2 40 67.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.6e-07 60.8 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 6.2e-07 58.9 35 80.0
Pp3c18_1310 Physcomitrium patens HOM05D029718 ORTHO05D026695 8.1e-07 58.5 121 33.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 1.4e-06 57.8 92 45.7


User provided reference genes

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