Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004283g0010 Nicotiana tabacum HOM05D003961 ORTHO05D004528 7.7e-169 597.0 298 100.0
Nitab4.5_0000043g0220 Nicotiana tabacum HOM05D003961 ORTHO05D004528 3.2e-122 442.2 420 63.6
Peaxi162Scf00092g01211 Petunia axillaris HOM05D003961 ORTHO05D004528 1.0e-120 437.2 423 61.5
CAN.G907.4 Capsicum annuum HOM05D003961 ORTHO05D004528 1.5e-116 423.3 429 60.1
PGSC0003DMG400030080 Solanum tuberosum HOM05D003961 ORTHO05D004528 2.9e-115 419.1 426 59.4
Solyc09g075970.3 Solanum lycopersicum HOM05D003961 ORTHO05D004528 1.2e-113 413.7 426 58.5
Sopen09g030800 Solanum pennellii HOM05D003961 ORTHO05D004528 3.9e-112 408.7 426 57.7
Cc03_g03700 Coffea canephora HOM05D003961 ORTHO05D004528 8.1e-102 374.4 274 71.2
Dinv13990 Davidia involucrata HOM05D003961 ORTHO05D004528 1.8e-101 373.2 274 71.5
Dinv44530 Davidia involucrata HOM05D003961 ORTHO05D004528 1.2e-100 370.5 274 70.1
Lj6A609T80 Lonicera japonica HOM05D003961 ORTHO05D004528 3.8e-99 365.5 272 69.5
Atru.ctg752_3.90 Acer truncatum HOM05D003961 ORTHO05D004528 1.4e-98 363.6 277 70.0
CiPaw.01G165200 Carya illinoinensis HOM05D003961 ORTHO05D004528 1.9e-98 363.2 281 69.8
Nitab4.5_0000321g0090 Nicotiana tabacum HOM05D003961 ORTHO05D004528 3.2e-98 362.5 252 74.6
Oeu023394.1 Olea europaea HOM05D003961 ORTHO05D004528 9.3e-98 360.9 273 68.9
Cfa015636 Carpinus fangiana HOM05D003961 ORTHO05D004528 1.6e-97 360.1 278 69.1
Potri.008G152100 Populus trichocarpa HOM05D003961 ORTHO05D004528 2.1e-97 359.8 278 68.3
GSVIVG01017963001 Vitis vinifera HOM05D003961 ORTHO05D004528 3.5e-97 359.0 281 68.0
Potri.010G088300 Populus trichocarpa HOM05D003961 ORTHO05D004528 6.0e-97 358.2 278 67.3
Prupe.1G012800 Prunus persica HOM05D003961 ORTHO05D004528 7.9e-97 357.8 280 67.1
CiPaw.02G096900 Carya illinoinensis HOM05D003961 ORTHO05D004528 1.3e-96 357.1 280 67.9
Oeu050277.1 Olea europaea HOM05D003961 ORTHO05D004528 2.3e-96 356.3 273 67.4
Oeu031235.1 Olea europaea HOM05D003961 ORTHO05D004528 3.9e-96 355.5 348 57.5
Eucgr.H03517 Eucalyptus grandis HOM05D003961 ORTHO05D004528 5.1e-96 355.1 272 67.6
Sabra10G0054500 Salix brachista HOM05D003961 ORTHO05D004528 6.7e-96 354.8 278 67.3
Ciclev10005024m.g Citrus clementina HOM05D003961 ORTHO05D004528 8.7e-96 354.4 280 67.1
QL06p002667 Quercus lobata HOM05D003961 ORTHO05D004528 1.5e-95 353.6 278 67.3
Peaxi162Scf00642g00006 Petunia axillaris HOM05D003961 ORTHO05D004528 5.6e-95 351.7 401 53.9
HanXRQChr10g0296391 Helianthus annuus HOM05D003961 ORTHO05D004528 3.7e-94 349.0 270 68.1
DCAR_030632 Daucus carota HOM05D003961 ORTHO05D004528 6.2e-94 348.2 273 64.1
Actinidia23507 Actinidia chinensis HOM05D003961 ORTHO05D004528 8.1e-94 347.8 271 68.3
TAR365G0124 Trochodendron aralioides HOM05D003961 ORTHO05D004528 4.0e-93 345.5 278 65.5
MSTRG.9986 Avicennia marina HOM05D003961 ORTHO05D004528 6.9e-93 344.7 276 66.7
FvH4_4g15420 Fragaria vesca HOM05D003961 ORTHO05D004528 6.9e-93 344.7 282 65.6
FAN07G0246 Fragaria x ananassa HOM05D003961 ORTHO05D004528 6.9e-93 344.7 282 65.6
Manes.15G028400 Manihot esculenta HOM05D003961 ORTHO05D004528 9.0e-93 344.4 430 49.5
Lsat_1_v5_gn_5_148741 Lactuca sativa HOM05D003961 ORTHO05D004528 2.0e-92 343.2 270 67.0
FAN17G1073 Fragaria x ananassa HOM05D003961 ORTHO05D004528 2.6e-92 342.8 282 65.2
Nn1g02291 Nelumbo nucifera HOM05D003961 ORTHO05D004528 3.4e-92 342.4 281 64.4
MSTRG.4028 Avicennia marina HOM05D003961 ORTHO05D004528 5.8e-92 341.7 274 64.2
FAN12G2300 Fragaria x ananassa HOM05D003961 ORTHO05D004528 5.8e-92 341.7 282 65.2
FAN22G1591 Fragaria x ananassa HOM05D003961 ORTHO05D004528 7.6e-92 341.3 282 64.9
HanXRQChr04g0109101 Helianthus annuus HOM05D003961 ORTHO05D004528 1.3e-91 340.5 269 65.4
DCAR_002388 Daucus carota HOM05D003961 ORTHO05D004528 2.2e-91 339.7 274 65.7
MD13G1192100 Malus domestica HOM05D003961 ORTHO05D004528 2.9e-91 339.3 282 65.2
PGR004G2370 Punica granatum HOM05D003961 ORTHO05D004528 2.9e-91 339.3 274 65.7
COL.COLO4_05309 Corchorus olitorius HOM05D003961 ORTHO05D004528 3.8e-91 339.0 275 68.0
Gorai.005G042200 Gossypium raimondii HOM05D003961 ORTHO05D004528 3.8e-91 339.0 274 67.9
Gohir.A02G031600 Gossypium hirsutum HOM05D003961 ORTHO05D004528 4.9e-91 338.6 274 67.9
Sabra08G0115900 Salix brachista HOM05D003961 ORTHO05D004528 4.9e-91 338.6 278 65.1
Duzib052G0053 Durio zibethinus HOM05D003961 ORTHO05D004528 8.4e-91 337.8 272 66.9
Thecc.04G230700 Theobroma cacao HOM05D003961 ORTHO05D004528 8.4e-91 337.8 272 67.3
Gohir.D02G038300 Gossypium hirsutum HOM05D003961 ORTHO05D004528 2.5e-90 336.3 274 67.2
TAR362G0627 Trochodendron aralioides HOM05D003961 ORTHO05D004528 7.1e-90 334.7 279 63.8
CANSAT78G1057 Cannabis sativa HOM05D003961 ORTHO05D004528 1.2e-89 334.0 287 62.7
SalBow2G1240 Salvia bowleyana HOM05D003961 ORTHO05D004528 1.6e-89 333.6 281 63.7
Migut.G00334 Erythranthe guttata HOM05D003961 ORTHO05D004528 7.9e-89 331.3 284 64.8
Manes.03G179600 Manihot esculenta HOM05D003961 ORTHO05D004528 7.9e-89 331.3 278 64.0
RcHm_v2.0_Chr4g0416361 Rosa chinensis HOM05D003961 ORTHO05D004528 1.3e-88 330.5 287 63.1
CSS0001637 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 6.7e-88 328.2 272 64.0
Actinidia08494 Actinidia chinensis HOM05D003961 ORTHO05D004528 1.1e-87 327.4 275 64.4
Aqoxy5G00479 Aquilegia oxysepala HOM05D003961 ORTHO05D004528 1.1e-87 327.4 281 63.7
TWI73G0616 Tripterygium wilfordii HOM05D003961 ORTHO05D004528 1.1e-87 327.4 279 63.8
Phvul.007G056700 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 5.7e-87 325.1 272 65.8
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea HOM05D003961 ORTHO05D004528 7.4e-87 324.7 275 62.5
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea HOM05D003961 ORTHO05D004528 1.6e-86 323.6 279 61.6
Glyma.20G145500 Glycine max HOM05D003961 ORTHO05D004528 1.1e-85 320.9 271 63.5
TAR633G2096 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.4e-85 319.7 278 60.4
Cpa.g.sc58.116 Carica papaya HOM05D003961 ORTHO05D004528 3.1e-85 319.3 274 64.6
VMungo0720G2903 Vigna mungo HOM05D003961 ORTHO05D004528 3.1e-85 319.3 272 64.3
Lj5g0020823 Lotus japonicus HOM05D003961 ORTHO05D004528 9.0e-85 317.8 271 62.7
Glyma.10G248600 Glycine max HOM05D003961 ORTHO05D004528 1.5e-84 317.0 272 63.2
CSS0032523 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 2.0e-84 316.6 274 62.4
Duzib151G0309 Durio zibethinus HOM05D003961 ORTHO05D004528 3.4e-84 315.8 272 64.7
Duzib212G0915 Durio zibethinus HOM05D003961 ORTHO05D004528 4.5e-84 315.5 272 65.1
Actinidia40151 Actinidia chinensis HOM05D003961 ORTHO05D004528 1.3e-83 313.9 271 62.7
MELO3C006535.2 Cucumis melo HOM05D003961 ORTHO05D004528 1.7e-83 313.5 284 58.8
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea HOM05D003961 ORTHO05D004528 2.2e-83 313.2 274 60.2
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea HOM05D003961 ORTHO05D004528 2.2e-83 313.2 274 60.2
Rhsim02G0023600 Rhododendron simsii HOM05D003961 ORTHO05D004528 2.2e-83 313.2 279 62.7
CsaV3_3G013370 Cucumis sativus L. HOM05D003961 ORTHO05D004528 8.4e-83 311.2 284 58.1
PSO832G1325 Papaver somniferum HOM05D003961 ORTHO05D004528 3.2e-82 309.3 283 60.1
Psat6g208040 Pisum sativum HOM05D003961 ORTHO05D004528 2.1e-81 306.6 272 60.7
Ca_10910_v3 Cicer arietinum L. HOM05D003961 ORTHO05D004528 2.3e-80 303.1 272 59.6
Sed0004334 Sechium edule HOM05D003961 ORTHO05D004528 5.1e-80 302.0 280 57.9
EL10Ac3g06424 Beta vulgaris HOM05D003961 ORTHO05D004528 8.7e-80 301.2 295 58.0
PSO210G4025 Papaver somniferum HOM05D003961 ORTHO05D004528 1.1e-79 300.8 284 59.2
Sc13g0004340 Simmondsia chinensis HOM05D003961 ORTHO05D004528 3.3e-79 299.3 307 54.4
Haze_00908 Corylus avellana HOM05D003961 ORTHO05D004528 5.7e-79 298.5 247 65.6
Thhalv10007749m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 3.7e-78 295.8 272 60.3
Nn4g26303 Nelumbo nucifera HOM05D003961 ORTHO05D004528 4.8e-78 295.4 284 57.0
SGA_v2.0_scaffold39G15244 Striga asiatica HOM05D003961 ORTHO05D004528 1.4e-77 293.9 279 59.9
Lalb_Chr05g0210961 Lupinus albus HOM05D003961 ORTHO05D004528 1.8e-77 293.5 270 61.9
CARHR004880 Cardamine hirsuta HOM05D003961 ORTHO05D004528 4.1e-77 292.4 272 59.6
AUR62033612 Chenopodium quinoa HOM05D003961 ORTHO05D004528 1.2e-76 290.8 293 57.3
AL1G15190 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 5.9e-76 288.5 272 58.8
AT1G05370 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 5.9e-76 288.5 272 59.2
Sed0007259 Sechium edule HOM05D003961 ORTHO05D004528 1.0e-75 287.7 282 55.0
Sp1g04240 Schrenkiella parvula HOM05D003961 ORTHO05D004528 2.2e-75 286.6 272 58.8
A10p04070 Brassica napus HOM05D003961 ORTHO05D004528 3.8e-75 285.8 273 59.0
BraA10t42678Z Brassica rapa HOM05D003961 ORTHO05D004528 3.8e-75 285.8 273 59.0
Aa31LG1G19250 Aethionema arabicum HOM05D003961 ORTHO05D004528 1.9e-74 283.5 273 57.1
THA.LOC104826163 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 3.2e-74 282.7 273 57.5
BolC5t29146H Brassica oleracea HOM05D003961 ORTHO05D004528 4.2e-74 282.3 273 58.6
Carub.0001s0471 Capsella rubella HOM05D003961 ORTHO05D004528 5.5e-74 282.0 274 58.8
MBI04_g20819_MAGBIO Magnolia biondii HOM05D003961 ORTHO05D004528 5.5e-74 282.0 273 60.1
C05p03710 Brassica napus HOM05D003961 ORTHO05D004528 7.2e-74 281.6 273 58.2
Medtr1g104540 Medicago truncatula HOM05D003961 ORTHO05D004528 7.2e-74 281.6 274 57.3
Hund12136 Selenicereus undatus HOM05D003961 ORTHO05D004528 3.6e-73 279.3 287 55.1
THA.LOC104801547 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 5.1e-72 275.4 272 57.7
BolC8t52703H Brassica oleracea HOM05D003961 ORTHO05D004528 3.3e-71 272.7 272 56.2
BcaC07g42133 Brassica carinata HOM05D003961 ORTHO05D004528 6.3e-70 268.5 273 56.0
C08p51740 Brassica napus HOM05D003961 ORTHO05D004528 6.3e-70 268.5 273 56.0
A09p67460 Brassica napus HOM05D003961 ORTHO05D004528 4.1e-69 265.8 273 56.0
BraA09t42074Z Brassica rapa HOM05D003961 ORTHO05D004528 4.1e-69 265.8 273 56.0
Atru.chr4.2476 Acer truncatum HOM05D003961 ORTHO05D004528 4.7e-65 252.3 279 54.1
THA.LOC104808538 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 5.2e-64 248.8 278 53.6
Rhsim04G0203000 Rhododendron simsii HOM05D003961 ORTHO05D004528 8.8e-64 248.1 218 61.9
SalBow2G2398 Salvia bowleyana HOM05D003961 ORTHO05D004528 2.6e-63 246.5 231 58.4
Ah.13g073820 Amaranthus hybridus HOM05D003961 ORTHO05D004528 1.1e-61 241.1 271 53.9
MD16G1192700 Malus domestica HOM05D003961 ORTHO05D004528 8.5e-59 231.5 213 60.6
A05p26360 Brassica napus HOM05D003961 ORTHO05D004528 5.5e-58 228.8 275 51.3
BraA05t21511Z Brassica rapa HOM05D003961 ORTHO05D004528 5.5e-58 228.8 275 51.3
ClCG05G005190 Citrullus lanatus HOM05D003961 ORTHO05D004528 5.5e-58 228.8 261 49.8
AT3G22410 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 1.2e-57 227.6 272 50.4
Carub.0003s2257 Capsella rubella HOM05D003961 ORTHO05D004528 4.7e-57 225.7 275 49.8
Thhalv10020858m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 6.1e-57 225.3 274 51.1
BcaC05g28076 Brassica carinata HOM05D003961 ORTHO05D004528 2.3e-56 223.4 275 50.5
C05p40990 Brassica napus HOM05D003961 ORTHO05D004528 2.3e-56 223.4 275 50.5
BolC5t32840H Brassica oleracea HOM05D003961 ORTHO05D004528 2.3e-56 223.4 275 50.5
AL3G36680 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 3.0e-56 223.0 272 50.4
CARHR098300 Cardamine hirsuta HOM05D003961 ORTHO05D004528 5.2e-56 222.2 273 49.5
unitig_748.g8337 Utricularia gibba HOM05D003961 ORTHO05D004528 3.3e-55 219.5 265 49.8
Os03g0219100 Oryza sativa ssp. japonica HOM05D003961 ORTHO05D004528 9.7e-55 218.0 261 52.1
unitig_748.g8543 Utricularia gibba HOM05D003961 ORTHO05D004528 3.1e-53 213.0 268 48.9
HPP92_007926 Vanilla planifolia HOM05D003961 ORTHO05D004528 7.0e-53 211.8 276 47.1
Sp3g20170 Schrenkiella parvula HOM05D003961 ORTHO05D004528 1.2e-52 211.1 278 48.9
BcaB06g26342 Brassica carinata HOM05D003961 ORTHO05D004528 1.0e-51 208.0 274 48.2
Zm00001eb008830 Zea mays HOM05D003961 ORTHO05D004528 8.5e-51 204.9 272 47.8
C01p41880 Brassica napus HOM05D003961 ORTHO05D004528 1.2e-49 201.1 281 47.0
Ah.04g154530 Amaranthus hybridus HOM05D003961 ORTHO05D004528 2.7e-49 199.9 218 54.1
A01p32690 Brassica napus HOM05D003961 ORTHO05D004528 4.7e-49 199.1 281 46.3
BraA01t03397Z Brassica rapa HOM05D003961 ORTHO05D004528 6.1e-49 198.7 281 46.3
BcaB04g20519 Brassica carinata HOM05D003961 ORTHO05D004528 1.8e-48 197.2 270 47.4
BcaC09g49172 Brassica carinata HOM05D003961 ORTHO05D004528 6.8e-48 195.3 281 46.3
BolC1t04141H Brassica oleracea HOM05D003961 ORTHO05D004528 6.8e-48 195.3 281 46.3
TPR.G5481 Trifolium pratense HOM05D003961 ORTHO05D004528 6.8e-48 195.3 275 46.5
ATR0737G092 Amborella trichopoda HOM05D003961 ORTHO05D004528 3.4e-47 193.0 276 46.4
Zm00001eb400000 Zea mays HOM05D003961 ORTHO05D004528 5.7e-47 192.2 273 46.9
Aa31LG8G8940 Aethionema arabicum HOM05D003961 ORTHO05D004528 3.5e-44 183.0 278 42.8
Sc19g0004200 Simmondsia chinensis HOM05D003961 ORTHO05D004528 1.7e-43 180.6 288 40.6
SHI00429 Sapria himalayana HOM05D003961 ORTHO05D004528 1.2e-39 167.9 238 46.2
Phvul.002G046000 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 8.3e-38 161.8 257 41.6
CDE10G1225 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 1.8e-37 160.6 259 40.5
VMungo1215G0448 Vigna mungo HOM05D003961 ORTHO05D004528 5.0e-35 152.5 235 41.3
Migut.N00179 Erythranthe guttata HOM05D003961 ORTHO05D004528 5.9e-28 129.0 163 49.7
unitig_41.g31645 Utricularia gibba HOM05D003961 ORTHO05D004528 5.9e-28 129.0 236 41.1
ECA234G0180 Erigeron canadensis HOM05D003961 ORTHO05D004528 3.7e-22 109.8 104 58.7
Hma1.2p1_0745F.1_g211900 Hydrangea macrophylla HOM05D003961 ORTHO05D004528 1.1e-21 108.2 89 62.9
CDE10G0336 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 4.9e-14 82.8 105 42.9
Pp3c16_18230 Physcomitrium patens HOM05D003961 ORTHO05D004528 1.1e-13 81.6 281 28.5
Pp3c25_7490 Physcomitrium patens HOM05D003961 ORTHO05D004528 4.1e-13 79.7 265 29.4
SalBow3G0892 Salvia bowleyana HOM05D003961 ORTHO05D004528 7.1e-13 79.0 80 53.8
Pp3c6_16090 Physcomitrium patens HOM05D003961 ORTHO05D004528 9.2e-13 78.6 289 28.7
Actinidia36962 Actinidia chinensis HOM05D003961 ORTHO05D004528 3.5e-12 76.6 43 79.1
TAR633G0076 Trochodendron aralioides HOM05D000441 ORTHO05D414409 1.1e-10 71.6 50 62.0
Actinidia36963 Actinidia chinensis HOM05D003961 ORTHO05D055364 7.3e-10 68.9 39 82.1
Pp3c1_24930 Physcomitrium patens HOM05D003961 ORTHO05D004528 2.8e-09 67.0 367 23.2
SMO347G0581 Selaginella moellendorffii HOM05D003961 ORTHO05D004528 2.8e-09 67.0 270 25.2
Mapoly0016s0069 Marchantia polymorpha HOM05D003961 ORTHO05D004528 4.0e-08 63.2 242 26.0


User provided reference genes

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