Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1780.8 896 100.0
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1722.2 896 96.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1604.7 897 89.7
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1604.0 900 89.6
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1602.0 897 89.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1589.7 897 88.7
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1533.9 866 89.0
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1506.5 897 82.9
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1504.2 897 82.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1334.7 897 72.6
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1331.2 898 72.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1307.0 897 70.0
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1307.0 869 73.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1305.8 897 70.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1302.3 897 69.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1299.6 897 71.1
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 899 70.9
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1292.3 897 70.2
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1291.9 897 70.2
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 897 69.1
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1284.6 898 70.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1283.1 897 69.9
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1281.9 897 70.6
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1281.9 898 70.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1278.8 906 69.9
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1275.8 897 69.2
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1275.8 906 69.0
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1274.2 915 67.0
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1272.3 898 69.0
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1270.4 882 69.6
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1270.0 898 68.9
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1268.4 897 69.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1264.2 896 68.5
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1263.8 898 68.7
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1260.4 897 68.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 897 67.9
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1255.7 898 67.9
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 994 64.1
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1253.8 899 67.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1253.8 897 67.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1252.7 897 68.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1251.9 897 68.2
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1249.6 899 68.9
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1249.2 899 68.6
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1247.3 897 67.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1246.9 992 63.3
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1243.8 899 67.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1242.6 897 66.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1242.3 897 67.9
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1241.5 897 67.2
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1238.8 898 67.8
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 898 68.7
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1237.2 898 68.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 899 66.9
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 920 66.1
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1234.6 897 66.8
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1233.4 898 68.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1233.4 898 68.4
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1224.2 900 66.7
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1223.0 900 66.6
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1221.1 854 69.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 897 65.9
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 897 65.9
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 897 65.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 891 66.1
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 897 65.6
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1218.0 897 66.8
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1217.2 897 66.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1216.1 897 66.3
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1214.9 897 65.1
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1213.7 897 66.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1213.7 898 65.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1213.4 897 65.7
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 897 65.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1208.7 897 66.4
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1208.0 900 64.9
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1206.4 897 66.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1206.0 898 65.0
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1204.5 899 65.1
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1204.5 897 65.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1204.1 897 65.4
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1203.0 897 66.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1199.1 912 65.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1198.7 897 67.1
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1198.3 897 64.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1197.6 897 64.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1196.8 896 65.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1195.3 897 65.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1195.3 897 64.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1194.9 898 65.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1192.6 897 65.0
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1192.2 898 65.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1191.0 897 64.7
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1190.3 897 64.9
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1185.2 897 65.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1184.5 899 63.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1183.7 899 63.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1183.3 917 64.1
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1181.4 905 65.2
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1178.3 868 66.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1177.2 900 65.4
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1176.8 899 62.7
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1175.6 899 63.0
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1174.8 924 63.6
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1174.5 928 63.5
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 905 62.2
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1166.4 905 65.0
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1144.0 897 63.2
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1144.0 897 63.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1137.5 881 64.6
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1136.7 912 62.8
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1120.1 893 61.0
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1107.4 897 61.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1092.8 897 62.0
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1088.6 893 60.4
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1081.6 897 61.1
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 5.5e-311 1070.8 903 58.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 5.7e-308 1060.8 879 58.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 1.1e-306 1056.6 893 57.4
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.0e-304 1050.0 926 59.0
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 2.2e-304 1048.9 809 63.2
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.7e-288 996.1 760 62.6
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.4e-282 975.7 760 62.1
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.5e-265 918.7 722 61.9
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 4.3e-263 911.8 867 54.9
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.0e-256 889.0 659 66.0
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.4e-250 869.4 890 51.6
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.7e-246 855.1 902 50.6
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.1e-240 835.1 688 60.8
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 9.9e-236 820.8 658 61.9
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.6e-212 743.0 866 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.1e-209 733.4 881 44.3
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.0e-209 731.9 454 76.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-185 654.4 809 47.5
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.4e-159 566.6 443 63.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.2e-154 550.1 420 66.0
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.6e-148 531.2 897 38.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-132 476.1 854 36.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.9e-126 457.2 276 76.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-107 395.2 256 75.8
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.3e-106 390.6 330 58.5
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.6e-103 380.9 663 40.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.4e-96 358.6 209 82.3
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 5.3e-96 356.7 209 81.8
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 3.2e-93 347.4 962 30.1
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.8e-91 341.7 380 48.2
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.3e-90 337.0 195 83.1
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 2.7e-84 317.8 319 52.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.3e-83 314.7 927 30.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.1e-76 290.0 256 57.8
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.8e-73 281.2 363 43.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 9.7e-58 229.6 251 48.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.8e-48 198.7 140 67.1
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 1.8e-48 198.7 355 35.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 6.8e-43 180.3 105 81.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.4e-34 151.4 101 71.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 7.5e-34 150.2 101 71.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 7.5e-34 150.2 101 71.3
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 3.8e-30 137.9 182 46.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.1e-24 119.8 98 58.2
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 7.0e-24 117.1 82 68.3
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.1e-21 109.8 82 57.3
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 2.0e-18 99.0 71 69.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.0e-18 99.0 61 83.6
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.6e-18 98.6 63 74.6
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.3e-17 96.3 53 79.2
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.3e-17 96.3 193 34.2
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.2e-17 95.5 62 69.4
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.7e-17 94.7 72 68.1
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 7.8e-15 87.0 138 39.1
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 6.6e-14 84.0 47 76.6
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.9e-13 82.4 60 66.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.1e-11 76.6 60 63.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.0e-11 74.7 60 61.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 4.0e-11 74.7 42 78.6
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.4e-10 71.2 38 84.2
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.4e-10 71.2 38 84.2
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 3.2e-08 65.1 40 85.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 3.2e-08 65.1 40 85.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.2e-07 63.2 115 43.5
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 4.6e-07 61.2 37 78.4


User provided reference genes

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