Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 3.0e-158 562.8 554 100.0
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.9e-128 463.8 547 92.0
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 1.0e-65 255.4 145 85.5
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 3.9e-65 253.4 191 68.6
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 5.6e-64 249.6 182 70.3
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 3.1e-62 243.8 145 80.7
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 7.6e-61 239.2 549 44.8
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 5.3e-54 216.5 191 58.6
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 5.4e-51 206.5 187 57.2
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 7.1e-51 206.1 145 66.2
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 1.0e-49 202.2 191 55.0
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 6.7e-49 199.5 191 53.9
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.5e-48 198.4 172 56.4
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 1.9e-48 198.0 191 52.9
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.9e-48 198.0 191 53.4
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 1.9e-48 198.0 191 52.9
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 3.3e-48 197.2 172 58.7
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 9.6e-48 195.7 147 64.6
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 2.1e-47 194.5 145 65.5
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 4.8e-47 193.4 145 66.9
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 4.8e-47 193.4 143 62.9
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 6.2e-47 193.0 133 83.5
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 3.1e-46 190.7 216 49.1
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 9.0e-46 189.1 172 54.7
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 1.2e-45 188.7 159 57.2
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 2.6e-45 187.6 191 51.3
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 3.4e-45 187.2 191 51.3
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.4e-45 187.2 172 54.1
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 5.8e-45 186.4 145 60.0
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 1.7e-44 184.9 172 55.8
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 2.9e-44 184.1 159 57.2
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 4.9e-44 183.3 172 54.7
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 4.9e-44 183.3 172 54.7
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 6.5e-44 183.0 167 56.3
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 8.4e-44 182.6 172 54.1
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 1.4e-43 181.8 159 56.0
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 2.5e-43 181.0 188 50.5
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 3.2e-43 180.6 172 53.5
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 3.2e-43 180.6 172 53.5
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 4.2e-43 180.3 145 58.6
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 7.1e-43 179.5 172 52.9
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 7.1e-43 179.5 145 58.6
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 7.1e-43 179.5 152 59.2
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 7.1e-43 179.5 159 54.1
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 1.2e-42 178.7 145 61.4
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 2.1e-42 177.9 191 49.2
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.3e-41 175.3 148 59.5
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.3e-41 175.3 148 59.5
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 1.8e-41 174.9 147 62.6
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 2.3e-41 174.5 191 50.3
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 3.9e-41 173.7 145 57.2
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 8.7e-41 172.6 161 53.4
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 1.5e-40 171.8 172 52.3
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 2.5e-40 171.0 172 48.8
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 1.6e-39 168.3 145 56.6
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 4.8e-39 166.8 192 47.4
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 6.2e-39 166.4 182 48.9
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 8.2e-39 166.0 207 42.0
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 8.2e-39 166.0 159 52.8
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 1.1e-38 165.6 147 55.8
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 2.0e-37 161.4 125 63.2
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 1.0e-36 159.1 145 55.2
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 2.9e-36 157.5 179 45.8
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 3.8e-36 157.1 148 55.4
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 5.0e-36 156.8 145 53.1
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 6.5e-36 156.4 140 57.1
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 7.9e-34 149.4 191 44.5
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 1.0e-33 149.1 145 49.7
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 1.1e-32 145.6 151 51.0
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 2.5e-32 144.4 151 50.3
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 3.3e-32 144.1 119 58.0
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 9.7e-32 142.5 117 55.6
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 9.7e-32 142.5 105 66.7
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 3.7e-31 140.6 188 41.0
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 6.3e-31 139.8 116 61.2
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 1.4e-30 138.7 151 48.3
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 2.4e-30 137.9 119 56.3
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 8.5e-28 129.4 117 54.7
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 3.2e-27 127.5 102 56.9
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 6.7e-25 119.8 128 46.9
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 3.3e-24 117.5 78 70.5
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.7e-23 114.0 124 50.0
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 4.8e-23 113.6 212 36.3
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 7.7e-21 106.3 119 46.2
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 1.1e-19 102.4 88 54.5
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 2.5e-19 101.3 115 45.2
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.5e-19 100.1 88 54.5
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 2.1e-18 98.2 76 60.5
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 2.7e-18 97.8 80 56.2
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 1.4e-17 95.5 89 51.7
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 1.3e-12 79.0 135 34.8
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 7.2e-11 73.2 117 33.3
Migut.I00272 Erythranthe guttata HOM05D007595 ORTHO05D009570 2.7e-10 71.2 65 52.3
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 3.6e-10 70.9 119 38.7
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 3.0e-09 67.8 120 39.2
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 1.7e-07 62.0 68 45.6
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 4.8e-07 60.5 69 39.1
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 4.8e-07 60.5 52 53.8
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 1.8e-06 58.5 71 39.4


User provided reference genes

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