Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.5e-58 226.9 106 100.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 6.5e-54 213.8 112 92.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 6.5e-54 213.8 112 92.0
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.5e-54 213.8 112 92.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.5e-54 213.8 112 92.0
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.5e-54 213.8 112 92.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 6.5e-54 213.8 112 92.0
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.0e-51 204.9 112 88.4
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.0e-51 204.9 112 88.4
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 5.2e-51 204.1 112 87.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.6e-50 201.8 112 86.6
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.5e-50 200.3 112 85.7
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.2e-49 198.7 112 86.6
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.8e-49 197.6 112 83.9
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 4.8e-49 197.6 112 84.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.1e-48 196.4 113 85.8
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-48 196.1 112 83.0
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.6e-47 192.6 111 84.7
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.7e-47 190.3 112 83.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.0e-46 189.9 112 83.0
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.2e-46 188.7 112 83.9
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 5.0e-46 187.6 114 82.5
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-45 186.4 114 80.7
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-45 186.4 114 80.7
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-45 186.4 114 80.7
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-45 186.4 114 80.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-45 185.3 114 81.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.5e-45 185.3 114 81.6
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.5e-45 185.3 112 83.0
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.2e-45 184.5 112 79.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 4.2e-45 184.5 112 83.0
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.5e-45 184.1 114 80.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.5e-45 184.1 114 80.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 7.2e-45 183.7 114 80.7
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.2e-44 183.0 111 80.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.2e-44 183.0 111 80.2
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.1e-44 182.2 116 79.3
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 2.1e-44 182.2 116 79.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.1e-44 182.2 116 79.3
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.1e-44 182.2 112 79.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 3.6e-44 181.4 116 79.3
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 3.6e-44 181.4 111 80.2
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 4.7e-44 181.0 111 79.3
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 6.3e-41 170.6 114 75.4
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.4e-40 168.7 79 98.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 3.1e-40 168.3 112 78.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.1e-40 167.9 103 81.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-40 167.9 101 83.2
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.5e-39 164.5 114 75.4
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-38 163.3 101 81.2
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-38 163.3 101 81.2
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-38 163.3 101 81.2
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-38 163.3 101 81.2
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.8e-38 161.4 104 74.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 3.3e-37 158.3 106 75.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.6e-36 156.0 79 91.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-36 155.6 107 74.8
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 6.1e-36 154.1 79 89.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-35 153.3 114 71.1
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 3.0e-35 151.8 79 89.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.0e-35 151.8 93 80.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.5e-34 149.4 91 81.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.7e-33 144.8 79 86.1
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-32 142.9 81 85.2
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 7.0e-32 140.6 81 84.0
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.6e-31 139.4 95 74.7
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 2.0e-31 139.0 81 84.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-31 139.0 84 81.0
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.8e-31 137.1 83 80.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 7.8e-31 137.1 83 80.7
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 7.8e-31 137.1 83 80.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.8e-31 137.1 83 80.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.8e-31 137.1 83 80.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.3e-30 136.3 79 83.5
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.9e-29 132.5 87 77.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 6.4e-25 117.5 81 72.8
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.5e-21 105.5 59 84.7
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.8e-20 102.1 60 83.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-19 98.6 59 81.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-18 96.7 79 62.0
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.3e-17 93.2 62 75.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 8.3e-17 90.5 87 57.5
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-13 80.1 97 50.5
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 1.9e-13 79.3 64 60.9
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.5e-13 79.0 45 84.4
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 8.9e-11 70.5 63 55.6
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.4e-08 62.4 32 87.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.4e-08 62.4 32 87.5
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 58.2 27 92.6
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 58.2 27 92.6
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 4.6e-07 58.2 27 92.6
Nitab4.5_0000185g0170 Nicotiana tabacum HOM05D002840 ORTHO05D003088 2.3e-06 55.8 32 78.1


User provided reference genes

Program Settings