Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.5e-253 879.4 558 100.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.4e-233 810.8 557 91.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 9.9e-218 760.4 570 86.8
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 9.9e-218 760.4 570 87.4
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.7e-207 725.7 559 84.1
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.7e-161 573.5 441 82.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.2e-159 567.4 560 68.8
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 3.3e-157 559.3 583 67.8
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 9.7e-157 557.8 513 73.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.3e-156 557.4 604 60.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.2e-156 556.6 442 81.2
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.8e-156 556.2 425 78.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 6.3e-156 555.1 560 68.6
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.5e-154 550.4 440 82.0
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 8.5e-153 544.7 443 74.0
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 4.7e-151 538.9 436 80.5
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 8.0e-151 538.1 440 74.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.3e-150 536.6 433 79.4
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.4e-149 532.3 456 76.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 7.4e-149 531.6 436 79.4
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 7.4e-149 531.6 443 72.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 9.7e-149 531.2 440 73.4
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.3e-148 530.8 448 72.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.3e-148 530.8 438 77.6
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.7e-148 530.4 438 77.9
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.7e-148 530.4 437 79.2
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 4.8e-148 528.9 436 78.9
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 4.8e-148 528.9 437 73.9
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.3e-148 528.5 437 78.0
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.2e-148 528.1 457 75.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.8e-147 526.9 439 72.2
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 9.1e-147 524.6 525 68.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 9.1e-147 524.6 448 71.7
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.2e-146 524.2 444 64.9
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.2e-146 524.2 459 75.4
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.6e-146 523.1 445 75.5
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.5e-146 522.7 438 77.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 7.7e-146 521.5 453 74.0
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 7.7e-146 521.5 449 71.5
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 7.7e-146 521.5 440 70.9
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.7e-145 520.4 437 71.4
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.9e-145 519.6 448 70.5
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.0e-145 518.8 560 63.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 6.5e-145 518.5 438 71.0
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 8.5e-145 518.1 439 70.8
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 8.5e-145 518.1 439 74.9
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 8.5e-145 518.1 571 64.6
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 8.5e-145 518.1 440 75.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 8.5e-145 518.1 601 54.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.1e-144 517.7 447 77.0
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-144 516.9 438 77.4
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.9e-144 516.9 442 71.5
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.1e-143 513.5 485 66.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.1e-143 513.5 452 70.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-143 512.7 457 75.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 4.7e-143 512.3 576 60.4
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 8.0e-143 511.5 423 74.2
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.0e-142 511.1 538 66.9
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.4e-142 510.8 485 66.2
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-142 510.4 457 75.3
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-142 510.4 436 77.5
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 8.8e-142 508.1 562 64.4
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 4.4e-141 505.8 521 65.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.5e-141 505.0 436 76.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 9.8e-141 504.6 446 73.3
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.3e-140 504.2 445 75.7
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.8e-140 503.1 449 68.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 4.1e-139 499.2 435 71.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.0e-138 496.9 427 72.1
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 2.7e-138 496.5 452 71.5
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.0e-137 494.6 406 73.2
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.0e-137 494.6 394 82.5
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-137 494.2 489 64.6
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.7e-137 493.8 434 75.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 3.8e-137 492.7 434 72.1
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.8e-137 492.7 445 71.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 6.5e-137 491.9 434 73.3
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 6.5e-137 491.9 434 73.3
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.5e-136 490.7 447 71.6
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.9e-136 490.3 448 65.2
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.4e-136 488.0 436 75.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-135 486.9 436 75.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.7e-135 486.5 438 71.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 2.7e-135 486.5 429 73.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.6e-135 486.1 449 67.9
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 6.1e-135 485.3 449 69.9
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.4e-134 484.2 436 73.4
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.0e-134 483.0 445 70.8
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 6.8e-134 481.9 571 53.2
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.6e-133 479.9 447 67.1
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.6e-133 479.9 597 51.4
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 3.4e-133 479.6 568 62.3
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-132 477.6 453 72.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.7e-132 477.2 563 61.8
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 8.3e-132 474.9 437 73.5
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.4e-131 474.2 442 69.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 9.1e-131 471.5 401 72.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 4.5e-130 469.2 381 73.8
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.2e-128 462.6 443 72.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.0e-126 456.4 454 65.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 5.2e-126 455.7 355 71.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.6e-125 453.4 414 73.7
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.4e-125 452.6 441 65.1
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.7e-125 452.2 436 71.1
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 6.3e-124 448.7 423 73.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.4e-123 445.7 462 67.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 9.2e-123 444.9 460 62.8
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.7e-121 440.7 413 72.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 5.0e-121 439.1 448 70.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 8.6e-121 438.3 451 69.0
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-119 434.5 438 70.3
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.2e-119 432.2 418 71.8
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 2.2e-116 423.7 448 62.1
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.8e-109 399.1 348 79.3
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.4e-107 394.4 440 59.8
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.4e-107 393.7 396 68.2
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.2e-107 393.3 420 62.1
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 7.6e-101 372.1 541 52.9
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.1e-99 365.5 342 67.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.7e-95 352.8 401 69.3
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.1e-94 350.1 343 74.1
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 9.9e-93 345.1 331 65.0
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.7e-90 337.0 391 59.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.2e-84 317.4 319 58.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 5.1e-81 306.2 600 43.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.0e-77 294.3 285 77.9
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 2.6e-77 293.9 278 57.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.2e-76 290.8 548 45.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.5e-74 283.5 238 65.1
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.0e-73 280.4 499 46.7
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.7e-60 238.0 377 40.6
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 2.0e-53 214.5 135 80.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.5e-51 207.6 152 68.4
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-47 193.4 141 67.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-46 191.8 141 66.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 2.0e-45 188.0 180 57.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.0e-45 188.0 141 65.2
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-40 171.0 168 55.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-39 167.2 134 59.7
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.2e-39 166.0 134 59.7
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-34 151.4 171 50.9
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.0e-34 149.4 95 81.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-33 147.9 128 59.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-24 118.2 74 75.7
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.4e-24 117.5 106 54.7
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 3.7e-23 114.0 93 62.4
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 2.7e-18 97.8 208 33.7
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 3.0e-17 94.4 54 81.5
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.0e-16 91.7 340 27.4
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 6.3e-15 86.7 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.0e-14 83.2 71 66.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.7e-13 81.3 52 80.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.8e-09 68.6 57 63.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 4.1e-06 57.4 123 36.6


User provided reference genes

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