Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 5.2e-26 120.6 73 100.0
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.7e-16 89.0 59 84.7
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 1.1e-15 86.3 59 81.4
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 3.2e-15 84.7 59 79.7
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.6e-14 82.4 59 79.7
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 3.5e-14 81.3 59 91.5
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 2.9e-13 78.2 59 71.2
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.1e-12 76.3 59 71.2
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 4.3e-12 74.3 59 72.9
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 5.6e-12 73.9 59 71.2
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.2e-11 72.8 60 70.0
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 1.2e-11 72.8 59 69.5
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 1.2e-11 72.8 59 69.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.1e-11 72.0 59 71.2
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 2.8e-11 71.6 58 67.2
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.8e-11 71.6 60 73.3
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 4.7e-11 70.9 60 71.7
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 4.7e-11 70.9 59 69.5
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 6.1e-11 70.5 60 71.7
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.1e-11 70.5 60 71.7
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 6.1e-11 70.5 60 71.7
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 8.0e-11 70.1 65 64.6
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 8.0e-11 70.1 60 71.7
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.0e-10 69.7 63 66.7
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.0e-10 69.7 59 66.1
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.0e-10 69.7 60 70.0
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.4e-10 69.3 60 70.0
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 1.4e-10 69.3 60 70.0
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.4e-10 69.3 60 70.0
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 1.8e-10 68.9 69 60.9
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.8e-10 68.9 56 67.9
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 70.0
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 2.3e-10 68.6 60 68.3
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 3.1e-10 68.2 60 68.3
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 4.0e-10 67.8 60 66.7
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 4.0e-10 67.8 60 66.7
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 4.0e-10 67.8 60 66.7
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 4.0e-10 67.8 68 60.3
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 4.0e-10 67.8 60 66.7
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 5.2e-10 67.4 60 66.7
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 5.2e-10 67.4 60 66.7
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 5.2e-10 67.4 60 68.3
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 6.8e-10 67.0 60 66.7
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 6.8e-10 67.0 60 66.7
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 6.8e-10 67.0 60 66.7
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.8e-10 67.0 60 68.3
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 6.8e-10 67.0 60 68.3
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 8.9e-10 66.6 60 68.3
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.2e-09 66.2 69 59.4
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 1.2e-09 66.2 60 66.7
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.5e-09 65.9 60 68.3
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.0e-09 65.5 60 66.7
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 2.0e-09 65.5 60 66.7
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 2.0e-09 65.5 69 56.5
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 2.6e-09 65.1 69 59.4
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 2.6e-09 65.1 60 66.7
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 2.6e-09 65.1 60 66.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.6e-09 65.1 67 58.2
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 3.4e-09 64.7 60 65.0
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 3.4e-09 64.7 58 67.2
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 3.4e-09 64.7 61 68.9
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 3.4e-09 64.7 60 66.7
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.4e-09 64.3 60 65.0
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.4e-09 64.3 60 65.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 5.8e-09 63.9 60 63.3
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 5.8e-09 63.9 60 65.0
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 5.8e-09 63.9 60 65.0
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 5.8e-09 63.9 60 65.0
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 7.5e-09 63.5 59 66.1
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 9.8e-09 63.2 59 64.4
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 9.8e-09 63.2 60 63.3
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 9.8e-09 63.2 60 65.0
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.3e-08 62.8 60 63.3
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.3e-08 62.8 60 65.0
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.3e-08 62.8 59 64.4
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 1.3e-08 62.8 60 63.3
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-08 62.4 58 65.5
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.7e-08 62.4 60 71.7
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.7e-08 62.4 60 71.7
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.7e-08 62.4 60 71.7
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.7e-08 62.4 60 65.0
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 1.7e-08 62.4 60 65.0
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 2.2e-08 62.0 60 61.7
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 2.9e-08 61.6 70 60.0
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 2.9e-08 61.6 60 63.3
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 2.9e-08 61.6 60 68.3
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 4.9e-08 60.8 61 65.6
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 6.4e-08 60.5 49 67.3
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-07 59.7 55 63.6
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 1.1e-07 59.7 55 63.6
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.9e-07 58.9 60 60.0
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.4e-07 58.5 53 62.3
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.2e-07 58.2 60 65.0
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 3.2e-07 58.2 69 56.5
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 4.1e-07 57.8 66 59.1
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 4.1e-07 57.8 57 61.4
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 1.6e-06 55.8 53 62.3
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 6.0e-06 53.9 58 56.9


User provided reference genes

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