Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004236g0070 Nicotiana tabacum HOM05D000076 ORTHO05D283100 8.7e-60 233.4 116 100.0
PGR102G0049 Punica granatum HOM05D000076 ORTHO05D006651 1.2e-16 90.1 75 61.3
QL07p005211 Quercus lobata HOM05D000076 ORTHO05D006651 3.5e-16 88.6 73 63.0
Ciclev10025636m.g Citrus clementina HOM05D000076 ORTHO05D006651 5.9e-16 87.8 75 60.0
Actinidia08805 Actinidia chinensis HOM05D000076 ORTHO05D006651 7.7e-16 87.4 75 60.0
MSTRG.11126 Avicennia marina HOM05D000076 ORTHO05D006651 1.0e-15 87.0 75 61.3
CiPaw.02G155700 Carya illinoinensis HOM05D000076 ORTHO05D006651 1.3e-15 86.7 75 60.0
Haze_16530 Corylus avellana HOM05D000076 ORTHO05D006651 1.3e-15 86.7 75 58.7
Manes.04G115500 Manihot esculenta HOM05D000076 ORTHO05D006651 1.3e-15 86.7 75 61.3
Manes.11G054200 Manihot esculenta HOM05D000076 ORTHO05D006651 1.7e-15 86.3 75 61.3
Eucgr.F02536 Eucalyptus grandis HOM05D000076 ORTHO05D006651 2.2e-15 85.9 75 60.0
MD17G1208100 Malus domestica HOM05D000076 ORTHO05D006651 2.2e-15 85.9 73 60.3
Sabra03G0036400 Salix brachista HOM05D000076 ORTHO05D006651 2.2e-15 85.9 75 60.0
CiPaw.11G039200 Carya illinoinensis HOM05D000076 ORTHO05D006651 3.8e-15 85.1 88 50.0
RcHm_v2.0_Chr2g0136181 Rosa chinensis HOM05D000076 ORTHO05D006651 3.8e-15 85.1 75 57.3
Dinv38105 Davidia involucrata HOM05D000076 ORTHO05D006651 5.0e-15 84.7 75 60.0
Eucgr.F02109 Eucalyptus grandis HOM05D000076 ORTHO05D006651 5.0e-15 84.7 75 58.7
CSS0012985 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 6.5e-15 84.3 75 60.0
vmacro16906 Vaccinium macrocarpon HOM05D000076 ORTHO05D006651 6.5e-15 84.3 75 60.0
CAN.G407.99 Capsicum annuum HOM05D000076 ORTHO05D006651 8.5e-15 84.0 75 60.0
CiPaw.07G036600 Carya illinoinensis HOM05D000076 ORTHO05D006651 8.5e-15 84.0 62 62.9
Dinv30582 Davidia involucrata HOM05D000076 ORTHO05D006651 8.5e-15 84.0 75 60.0
Sabra01G0140000 Salix brachista HOM05D000076 ORTHO05D006651 8.5e-15 84.0 75 57.3
Duzib235G1052 Durio zibethinus HOM05D000076 ORTHO05D006651 1.1e-14 83.6 76 59.2
FvH4_6g30130 Fragaria vesca HOM05D000076 ORTHO05D006651 1.1e-14 83.6 75 56.0
Hma1.2p1_0515F.1_g170160 Hydrangea macrophylla HOM05D000076 ORTHO05D006651 1.1e-14 83.6 75 61.3
Potri.003G062600 Populus trichocarpa HOM05D000076 ORTHO05D006651 1.1e-14 83.6 75 58.7
unitig_0.g1120 Utricularia gibba HOM05D000076 ORTHO05D006651 1.1e-14 83.6 75 60.0
Prupe.3G082600 Prunus persica HOM05D000076 ORTHO05D006651 1.5e-14 83.2 73 58.9
SGA_v2.0_scaffold5G02674 Striga asiatica HOM05D000076 ORTHO05D006651 1.5e-14 83.2 75 56.0
TAR383G0753 Trochodendron aralioides HOM05D000076 ORTHO05D006651 1.5e-14 83.2 73 58.9
GSVIVG01017295001 Vitis vinifera HOM05D000076 ORTHO05D006651 1.5e-14 83.2 75 56.0
Nn8g39420 Nelumbo nucifera HOM05D000076 ORTHO05D006651 1.9e-14 82.8 75 57.3
Rhsim12G0192300 Rhododendron simsii HOM05D000076 ORTHO05D006651 1.9e-14 82.8 75 58.7
CiPaw.01G245600 Carya illinoinensis HOM05D000076 ORTHO05D006651 2.5e-14 82.4 75 57.3
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 2.5e-14 82.4 79 54.4
Thhalv10011490m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 2.5e-14 82.4 77 54.5
Oeu015242.1 Olea europaea HOM05D000076 ORTHO05D006651 2.5e-14 82.4 75 57.3
Thecc.06G069500 Theobroma cacao HOM05D000076 ORTHO05D006651 2.5e-14 82.4 76 57.9
COL.COLO4_12922 Corchorus olitorius HOM05D000076 ORTHO05D006651 3.2e-14 82.0 76 57.9
Sp1g39180 Schrenkiella parvula HOM05D000076 ORTHO05D006651 3.2e-14 82.0 73 58.9
PGSC0003DMG400000612 Solanum tuberosum HOM05D000076 ORTHO05D006651 4.2e-14 81.6 75 58.7
BraA06t23390Z Brassica rapa HOM05D000076 ORTHO05D006651 5.5e-14 81.3 73 58.9
ClCG09G002820 Citrullus lanatus HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 56.0
ECA232G2965 Erigeron canadensis HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 57.3
FAN05G0493 Fragaria x ananassa HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 54.7
Nitab4.5_0001764g0030 Nicotiana tabacum HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 58.7
PSO170G4244 Papaver somniferum HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 56.0
PSO455G0226 Papaver somniferum HOM05D000076 ORTHO05D006651 5.5e-14 81.3 75 56.0
A06p01720 Brassica napus HOM05D000076 ORTHO05D006651 7.2e-14 80.9 73 57.5
CiPaw.03G185800 Carya illinoinensis HOM05D000076 ORTHO05D006651 7.2e-14 80.9 62 61.3
RcHm_v2.0_Chr2g0136261 Rosa chinensis HOM05D000076 ORTHO05D006651 7.2e-14 80.9 75 54.7
Cc04_g04180 Coffea canephora HOM05D000076 ORTHO05D006651 9.4e-14 80.5 73 57.5
Sopen03g035460 Solanum pennellii HOM05D000076 ORTHO05D006651 9.4e-14 80.5 75 58.7
TWI75G0213 Tripterygium wilfordii HOM05D000076 ORTHO05D006651 9.4e-14 80.5 76 57.9
Sp3g14030 Schrenkiella parvula HOM05D000076 ORTHO05D006651 1.2e-13 80.1 73 57.5
Atru.chr1.3044 Acer truncatum HOM05D000076 ORTHO05D006651 1.6e-13 79.7 73 56.2
CiPaw.03G141200 Carya illinoinensis HOM05D000076 ORTHO05D006651 1.6e-13 79.7 62 62.9
CiPaw.03G228600 Carya illinoinensis HOM05D000076 ORTHO05D006651 1.6e-13 79.7 62 61.3
MELO3C023412.2 Cucumis melo HOM05D000076 ORTHO05D006651 1.6e-13 79.7 79 53.2
Glyma.08G211300 Glycine max HOM05D000076 ORTHO05D006651 1.6e-13 79.7 75 56.0
HanXRQChr09g0274961 Helianthus annuus HOM05D000076 ORTHO05D006651 1.6e-13 79.7 75 56.0
ATR0807G240 Amborella trichopoda HOM05D000076 ORTHO05D006651 2.1e-13 79.3 75 54.7
AL1G60910 Arabidopsis lyrata HOM05D000076 ORTHO05D006651 2.1e-13 79.3 73 56.2
BcaB06g25673 Brassica carinata HOM05D000076 ORTHO05D006651 2.1e-13 79.3 73 57.5
CARHR042750 Cardamine hirsuta HOM05D000076 ORTHO05D006651 2.1e-13 79.3 73 56.2
DCAR_025498 Daucus carota HOM05D000076 ORTHO05D006651 2.1e-13 79.3 75 56.0
Nitab4.5_0010254g0070 Nicotiana tabacum HOM05D000076 ORTHO05D006651 2.1e-13 79.3 75 57.3
Sed0025008 Sechium edule HOM05D000076 ORTHO05D006651 2.1e-13 79.3 75 56.0
Solyc03g116550.4 Solanum lycopersicum HOM05D000076 ORTHO05D006651 2.1e-13 79.3 75 57.3
BcaC08g43438 Brassica carinata HOM05D000076 ORTHO05D006651 2.7e-13 79.0 73 57.5
C06p08060 Brassica napus HOM05D000076 ORTHO05D006651 2.7e-13 79.0 73 57.5
BolC6t35889H Brassica oleracea HOM05D000076 ORTHO05D006651 2.7e-13 79.0 73 57.5
AUR62011541 Chenopodium quinoa HOM05D000076 ORTHO05D006651 2.7e-13 79.0 73 56.2
Glyma.07G031500 Glycine max HOM05D000076 ORTHO05D006651 2.7e-13 79.0 75 56.0
Peaxi162Scf00332g00759 Petunia axillaris HOM05D000076 ORTHO05D006651 2.7e-13 79.0 75 57.3
THA.LOC104815535 Tarenaya hassleriana HOM05D000076 ORTHO05D006651 2.7e-13 79.0 73 56.2
VMungo0331G1252 Vigna mungo HOM05D000076 ORTHO05D006651 2.7e-13 79.0 75 56.0
Gohir.A06G115000 Gossypium hirsutum HOM05D000076 ORTHO05D006651 3.6e-13 78.6 76 55.3
Phvul.010G154600 Phaseolus vulgaris HOM05D000076 ORTHO05D006651 3.6e-13 78.6 75 54.7
Aqoxy7G02155 Aquilegia oxysepala HOM05D000076 ORTHO05D006651 4.7e-13 78.2 75 54.7
AT1G52630 Arabidopsis thaliana HOM05D000076 ORTHO05D006651 4.7e-13 78.2 73 54.8
CSS0004648 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 4.7e-13 78.2 75 54.7
AUR62016360 Chenopodium quinoa HOM05D000076 ORTHO05D006651 4.7e-13 78.2 73 54.8
Gohir.D06G119800 Gossypium hirsutum HOM05D000076 ORTHO05D006651 6.1e-13 77.8 76 55.3
Gorai.010G137800 Gossypium raimondii HOM05D000076 ORTHO05D006651 6.1e-13 77.8 76 55.3
Carub.0001s4162 Capsella rubella HOM05D000076 ORTHO05D006651 8.0e-13 77.4 73 56.2
CDE04G3285 Ceratophyllum demersum HOM05D002557 ORTHO05D006651 1.0e-12 77.0 75 54.7
arahy.Tifrunner.gnm1.ann1.BAYB07 Arachis hypogaea HOM05D000076 ORTHO05D006651 1.4e-12 76.6 75 53.3
arahy.Tifrunner.gnm1.ann1.PKV768 Arachis hypogaea HOM05D000076 ORTHO05D006651 1.4e-12 76.6 75 53.3
Lj3g0009412 Lotus japonicus HOM05D000076 ORTHO05D006651 1.4e-12 76.6 73 54.8
Migut.I00789 Erythranthe guttata HOM05D000076 ORTHO05D006651 1.8e-12 76.3 75 53.3
Sc12g0008690 Simmondsia chinensis HOM05D000076 ORTHO05D006651 1.8e-12 76.3 75 54.7
Lj5A69T35 Lonicera japonica HOM05D000076 ORTHO05D006651 2.3e-12 75.9 75 57.3
Aa31LG8G2920 Aethionema arabicum HOM05D000076 ORTHO05D006651 3.0e-12 75.5 74 55.4
Hund00540 Selenicereus undatus HOM05D000076 ORTHO05D006651 3.0e-12 75.5 75 54.7
EL10Ac9g21920 Beta vulgaris HOM05D000076 ORTHO05D006651 4.0e-12 75.1 73 53.4
Thhalv10020754m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 5.2e-12 74.7 73 56.2
HPP92_025294 Vanilla planifolia HOM05D000076 ORTHO05D006651 5.2e-12 74.7 75 53.3
HPP92_025297 Vanilla planifolia HOM05D000076 ORTHO05D006651 5.2e-12 74.7 75 53.3
CDE02G3459 Ceratophyllum demersum HOM05D000076 ORTHO05D006651 6.8e-12 74.3 75 53.3
Ah.01g020760 Amaranthus hybridus HOM05D000076 ORTHO05D006651 8.8e-12 73.9 73 52.1
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 8.8e-12 73.9 74 55.4
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 8.8e-12 73.9 74 55.4
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 8.8e-12 73.9 74 55.4
BolC5t33820H Brassica oleracea HOM05D000076 ORTHO05D006651 8.8e-12 73.9 74 55.4
BraA05t22193Z Brassica rapa HOM05D000076 ORTHO05D006651 8.8e-12 73.9 74 55.4
Lalb_Chr01g0012441 Lupinus albus HOM05D000076 ORTHO05D006651 1.2e-11 73.6 79 50.6
Lsat_1_v5_gn_4_106080 Lactuca sativa HOM05D000076 ORTHO05D006651 2.0e-11 72.8 77 54.5
SHI20604 Sapria himalayana HOM05D000076 ORTHO05D006651 9.8e-11 70.5 74 50.0
Medtr4g010990 Medicago truncatula HOM05D000076 ORTHO05D006651 2.8e-10 68.9 77 49.4
Os08g0537900 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006651 2.8e-10 68.9 59 59.3
TPR.G38688 Trifolium pratense HOM05D000076 ORTHO05D006651 4.8e-10 68.2 77 49.4
Ca_20433_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 6.3e-10 67.8 77 49.4
Ca_30892_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 6.3e-10 67.8 77 49.4
Psat7g256240 Pisum sativum HOM05D000076 ORTHO05D006651 6.3e-10 67.8 77 49.4
Zm00001eb037030 Zea mays HOM05D000076 ORTHO05D006651 1.4e-09 66.6 67 53.7
SMO116G0314 Selaginella moellendorffii HOM05D000076 ORTHO05D006651 6.6e-07 57.8 73 43.8
Medtr8g094680 Medicago truncatula HOM05D000076 ORTHO05D260553 5.5e-06 54.7 70 42.9


User provided reference genes

Program Settings