Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.4e-122 442.2 222 100.0
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-111 405.6 222 92.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.4e-90 335.9 222 79.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.0e-88 330.5 222 77.9
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.1e-86 321.2 222 76.6
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-83 313.5 222 71.2
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.8e-83 311.6 222 70.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.4e-82 310.1 223 74.4
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.3e-80 303.5 223 70.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.2e-80 302.8 223 70.4
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.2e-79 298.9 223 70.0
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.0e-78 294.3 223 68.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.6e-76 289.3 224 70.1
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 5.7e-68 261.5 224 62.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.7e-67 260.0 228 60.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.8e-66 256.5 220 61.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.4e-66 255.0 221 62.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 7.7e-65 251.1 229 57.6
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.5e-64 248.1 224 59.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.2e-63 245.4 221 59.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 5.5e-63 245.0 159 74.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.1e-62 243.0 240 55.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.6e-62 242.3 219 59.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-61 240.0 226 58.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.0e-61 238.8 223 57.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.8e-61 237.7 226 58.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.5e-60 236.9 225 56.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-60 236.5 238 53.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.6e-60 236.1 218 58.3
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.6e-60 236.1 223 57.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 4.4e-60 235.3 226 58.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.4e-60 235.3 225 55.1
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 4.4e-60 235.3 223 57.4
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.7e-60 235.0 227 55.9
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.7e-60 235.0 219 55.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.7e-59 233.4 233 54.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.2e-59 233.0 223 54.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-59 232.6 227 56.4
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 6.3e-59 231.5 222 55.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 6.3e-59 231.5 227 54.6
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.3e-59 231.1 211 59.7
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.4e-58 229.6 218 56.4
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.4e-58 229.6 218 56.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.4e-58 228.4 176 63.1
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.2e-58 227.6 158 67.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-57 227.3 158 69.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.2e-57 227.3 230 51.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-57 226.9 176 62.5
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.6e-57 226.9 223 52.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.7e-57 226.1 212 59.0
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.7e-57 226.1 228 54.8
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.7e-57 226.1 224 54.9
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.7e-57 226.1 217 56.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.5e-57 225.7 228 56.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.5e-57 225.3 212 57.5
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.9e-57 224.9 227 55.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 7.7e-57 224.6 216 54.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.0e-56 224.2 232 55.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.3e-56 223.8 222 54.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.3e-56 223.8 222 55.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.3e-56 223.8 220 53.6
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.7e-56 223.4 217 56.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.3e-56 223.0 224 54.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-56 222.6 221 54.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.9e-56 222.6 209 55.0
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-56 222.6 228 52.6
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.8e-56 222.2 217 52.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 5.0e-56 221.9 216 52.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.0e-56 221.9 229 52.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.0e-56 221.9 227 53.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.1e-55 220.7 158 67.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.5e-55 220.3 158 66.5
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.5e-55 219.5 158 66.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 2.5e-55 219.5 222 53.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-55 219.2 163 64.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.3e-55 219.2 221 52.5
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-55 218.8 159 64.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-55 218.8 159 64.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.3e-55 218.8 215 51.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.3e-55 218.8 159 63.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.3e-55 218.8 220 54.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.3e-55 218.8 220 54.5
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.6e-55 218.4 221 53.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 5.6e-55 218.4 231 50.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 9.5e-55 217.6 221 53.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 9.5e-55 217.6 221 53.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-54 217.2 219 53.4
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-54 217.2 229 52.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.6e-54 216.9 221 52.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.6e-54 216.9 225 52.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.6e-54 216.9 225 52.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.6e-54 216.9 216 53.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.8e-54 216.1 158 67.1
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 6.1e-54 214.9 220 51.4
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 8.0e-54 214.5 223 52.9
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.0e-53 214.2 169 59.8
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.4e-53 213.8 216 51.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.0e-53 212.6 228 50.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.0e-53 212.6 230 50.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 5.2e-53 211.8 219 49.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.2e-52 210.7 222 52.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.0e-52 209.9 223 50.7
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.4e-52 209.1 214 49.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.4e-52 208.8 224 50.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.7e-52 208.4 145 68.3
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.8e-52 207.6 231 48.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.3e-51 207.2 230 50.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.3e-51 207.2 230 50.4
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.9e-51 206.1 213 53.1
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-51 206.1 229 52.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.7e-51 205.7 159 59.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 4.9e-51 205.3 214 50.0
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 4.9e-51 205.3 159 59.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 6.4e-51 204.9 158 61.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.4e-50 203.8 228 49.1
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.8e-50 203.4 134 70.9
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 7.0e-50 201.4 165 58.2
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 7.0e-50 201.4 224 49.1
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 9.2e-50 201.1 158 58.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.2e-49 200.7 224 50.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.7e-49 199.5 228 50.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.5e-49 199.1 215 49.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-49 199.1 231 47.6
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.6e-49 198.7 233 47.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.7e-48 196.8 224 49.6
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.7e-48 196.8 234 46.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.3e-48 196.4 216 50.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 8.6e-48 194.5 154 59.1
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.5e-47 193.0 209 49.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.3e-47 191.4 154 59.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.2e-46 190.7 197 51.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.1e-45 186.0 236 47.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.0e-45 185.7 175 53.1
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 5.2e-45 185.3 235 48.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 6.8e-45 184.9 180 51.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-44 183.7 175 54.9
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.8e-44 181.8 175 52.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-43 179.9 129 64.3
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.2e-43 179.9 155 56.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-41 173.7 145 60.7
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-41 172.9 133 59.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-32 142.5 122 57.4
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 5.1e-32 142.1 106 62.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.5e-31 139.8 151 49.7
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 7.8e-25 118.2 94 55.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.3e-23 112.8 202 33.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.1e-22 108.2 143 38.5
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.1e-21 107.8 173 34.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.4e-21 107.5 154 37.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.9e-19 99.8 74 62.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 7.1e-18 95.1 183 31.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.0e-16 89.7 86 48.8
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.1e-14 83.6 85 47.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.8e-14 82.4 104 49.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.1e-13 81.3 151 34.4
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.3e-08 63.5 56 58.9
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 3.9e-08 62.8 56 58.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.3e-06 57.8 62 45.2


User provided reference genes

Program Settings