Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 3.4e-142 508.4 285 100.0
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.1e-123 446.0 291 90.4
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 7.3e-84 314.7 291 67.4
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 1.2e-83 313.9 293 64.5
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 4.7e-75 285.4 268 66.4
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 5.3e-74 282.0 289 59.9
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 6.4e-56 221.9 330 47.6
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 1.8e-53 213.8 291 52.2
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 3.4e-49 199.5 290 47.2
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 6.7e-45 185.3 294 44.6
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 1.1e-44 184.5 300 45.3
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.9e-44 183.7 288 45.8
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 2.5e-44 183.3 291 47.1
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 7.4e-44 181.8 315 44.4
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 7.4e-44 181.8 303 45.9
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 1.1e-42 177.9 301 44.2
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 2.4e-42 176.8 301 44.9
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 2.4e-42 176.8 301 42.9
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 4.1e-42 176.0 303 41.9
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 6.9e-42 175.3 331 41.4
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 1.5e-41 174.1 340 41.8
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 5.9e-41 172.2 295 45.4
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 7.7e-41 171.8 285 44.2
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 1.0e-40 171.4 286 44.8
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 1.3e-40 171.0 316 41.8
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.3e-40 171.0 334 40.7
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.7e-40 170.6 317 43.2
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.9e-39 167.2 304 43.1
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 6.1e-38 162.2 331 39.6
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 7.9e-38 161.8 289 41.9
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.0e-37 161.4 344 38.7
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 6.7e-37 158.7 277 42.6
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 2.2e-35 153.7 299 41.5
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.2e-35 153.7 296 41.6
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.8e-35 152.5 292 46.9
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.8e-34 150.6 283 42.0
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 5.3e-34 149.1 288 44.4
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 5.3e-34 149.1 278 41.4
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 6.9e-34 148.7 300 41.0
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 6.9e-34 148.7 325 40.9
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 9.1e-34 148.3 287 43.6
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 2.0e-33 147.1 295 40.3
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 5.9e-33 145.6 336 39.3
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 7.7e-33 145.2 297 38.7
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 1.7e-32 144.1 287 38.3
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 2.9e-32 143.3 285 37.5
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 3.8e-32 142.9 286 39.9
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 6.5e-32 142.1 296 44.6
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 3.2e-31 139.8 325 38.5
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 5.5e-31 139.0 283 45.9
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 7.2e-31 138.7 282 46.1
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 2.7e-30 136.7 282 38.3
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.8e-29 134.0 292 44.5
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 3.0e-29 133.3 312 38.1
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 3.0e-29 133.3 312 38.1
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 3.0e-29 133.3 296 45.6
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 8.8e-29 131.7 281 39.5
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 2.0e-28 130.6 281 36.7
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 3.3e-28 129.8 306 37.6
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 4.4e-28 129.4 276 42.4
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 1.3e-27 127.9 323 35.9
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 1.3e-27 127.9 294 40.8
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 7.0e-26 122.1 283 36.7
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 1.2e-25 121.3 308 34.4
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 1.2e-25 121.3 287 35.9
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.5e-25 120.9 287 37.3
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 7.7e-25 118.6 296 35.1
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 5.0e-24 115.9 311 34.7
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 1.1e-23 114.8 283 41.7
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 1.1e-23 114.8 71 87.3
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.4e-23 114.4 323 35.0
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.2e-22 111.3 307 37.5
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 1.6e-22 110.9 309 34.6
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 2.1e-22 110.5 299 35.8
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 2.1e-22 110.5 299 35.8
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 2.7e-22 110.2 291 35.1
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 6.1e-22 109.0 302 36.1
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 1.8e-21 107.5 299 35.1
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 5.2e-21 105.9 288 38.9
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 6.7e-21 105.5 291 35.7
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 1.1e-20 104.8 319 32.0
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 3.3e-20 103.2 322 32.9
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 7.4e-20 102.1 298 35.6
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 6.3e-19 99.0 276 34.8
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 1.4e-18 97.8 292 34.6
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 4.1e-18 96.3 258 35.3
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 4.1e-18 96.3 103 51.5
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 7.0e-18 95.5 371 34.5
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 2.0e-17 94.0 281 32.7
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 2.6e-17 93.6 339 33.0
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 4.2e-15 86.3 93 51.6
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 9.4e-15 85.1 69 62.3
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 2.1e-14 84.0 227 37.4
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 1.4e-13 81.3 94 51.1
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 1.8e-13 80.9 80 61.2
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.8e-13 80.9 97 48.5
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 4.0e-13 79.7 285 33.3
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 6.8e-13 79.0 270 33.7
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 2.6e-12 77.0 294 29.9
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 3.4e-12 76.6 100 49.0
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 4.4e-12 76.3 112 45.5
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 5.7e-12 75.9 90 45.6
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 9.7e-12 75.1 112 44.6
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 1.3e-11 74.7 261 38.7
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 2.2e-11 73.9 97 43.3
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 3.7e-11 73.2 296 29.7
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 6.3e-11 72.4 88 51.1
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 8.3e-11 72.0 64 57.8
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 8.3e-11 72.0 81 55.6
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 1.4e-10 71.2 68 63.2
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 1.4e-10 71.2 68 63.2
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 1.8e-10 70.9 88 44.3
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 2.4e-10 70.5 86 54.7
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 2.4e-10 70.5 90 51.1
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 3.1e-10 70.1 75 57.3
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 5.3e-10 69.3 68 61.8
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 5.3e-10 69.3 68 61.8
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 5.3e-10 69.3 100 46.0
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 5.3e-10 69.3 90 45.6
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 9.1e-10 68.6 91 48.4
AL1G37050 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 1.2e-09 68.2 78 56.4
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 1.2e-09 68.2 86 54.7
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 2.0e-09 67.4 69 58.0
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 2.0e-09 67.4 93 45.2
AL1G31860 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.5e-09 66.2 80 52.5
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 4.5e-09 66.2 85 55.3
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 4.5e-09 66.2 91 42.9
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.3e-08 64.7 83 48.2
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 1.3e-08 64.7 91 46.2
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 2.9e-08 63.5 197 29.9
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 3.8e-08 63.2 49 63.3
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 5.0e-08 62.8 283 30.4
SalBow6G4547 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.5e-08 62.4 55 58.2
SalBow2G1093 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.5e-08 62.0 84 50.0
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 8.5e-08 62.0 80 45.0
SalBow7G0563 Salvia bowleyana HOM05D005197 ORTHO05D006263 2.5e-07 60.5 84 48.8
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 3.2e-07 60.1 281 26.0
CARHR136460 Cardamine hirsuta HOM05D012124 ORTHO05D014419 6.1e-06 55.8 53 50.9
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 8.0e-06 55.5 60 50.0
Thhalv10017494m.g Eutrema salsugineum HOM05D012124 ORTHO05D014419 8.0e-06 55.5 72 43.1
Sp4g23640 Schrenkiella parvula HOM05D012124 ORTHO05D014419 8.0e-06 55.5 72 43.1
SGA_v2.0_scaffold447G51756 Striga asiatica HOM05D005197 ORTHO05D006263 8.0e-06 55.5 76 48.7


User provided reference genes

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