Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.9e-112 407.1 234 100.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 3.3e-106 388.7 230 97.4
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.3e-106 388.7 230 97.8
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 3.3e-106 388.7 230 97.8
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.3e-106 388.7 230 97.8
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.4e-104 383.3 233 96.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.7e-102 376.3 236 93.6
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 6.4e-102 374.4 233 94.0
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.4e-101 372.5 230 95.2
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.0e-100 367.9 230 94.3
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.9e-98 362.8 230 92.2
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.6e-97 359.8 230 92.2
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.8e-97 359.0 230 92.6
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 3.1e-96 355.5 230 91.3
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 6.8e-96 354.4 230 90.0
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 8.9e-96 354.0 230 90.4
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.9e-96 354.0 212 96.7
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.5e-95 353.2 230 90.9
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.5e-95 353.2 230 90.9
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.0e-95 352.8 229 89.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 4.4e-95 351.7 230 90.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 5.8e-95 351.3 230 89.1
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 7.6e-95 350.9 230 90.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 2.2e-94 349.4 230 89.6
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.9e-94 348.2 230 90.4
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 6.4e-94 347.8 227 89.9
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 8.4e-94 347.4 230 89.6
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.1e-93 347.1 230 89.1
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.4e-93 345.9 233 90.1
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.2e-92 343.6 229 88.6
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.6e-92 343.2 230 88.3
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.7e-92 342.4 230 89.6
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 4.6e-92 341.7 230 87.4
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.7e-91 339.7 230 87.4
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 3.0e-91 339.0 230 85.7
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.6e-91 337.4 234 85.9
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-90 336.7 230 87.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.5e-90 336.7 230 87.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.5e-90 335.9 230 88.7
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 4.3e-90 335.1 196 98.5
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.3e-90 335.1 230 87.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.8
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.6e-89 333.2 230 88.3
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.1e-89 332.8 230 87.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 2.8e-89 332.4 230 86.5
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.6e-89 332.0 230 86.5
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 4.7e-89 331.6 230 86.5
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.2e-89 331.3 230 87.8
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 8.1e-89 330.9 230 87.0
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 8.1e-89 330.9 230 86.5
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.1e-88 330.5 230 86.1
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.4e-88 330.1 230 87.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.8e-88 329.7 230 86.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.8e-88 329.7 230 86.5
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 3.1e-88 328.9 270 77.4
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 4.0e-88 328.6 230 86.5
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 5.2e-88 328.2 230 87.4
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.2e-88 328.2 230 87.4
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 8.9e-88 327.4 230 86.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 8.9e-88 327.4 230 86.5
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 8.9e-88 327.4 229 86.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 8.9e-88 327.4 230 85.2
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-87 327.0 230 85.7
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.2e-87 327.0 230 85.7
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.2e-87 327.0 230 86.5
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.5e-87 326.6 230 87.4
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 3.4e-87 325.5 229 87.3
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 4.4e-87 325.1 236 84.7
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-87 325.1 230 85.2
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 4.4e-87 325.1 229 85.2
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 5.8e-87 324.7 230 85.2
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 5.8e-87 324.7 198 94.9
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 7.6e-87 324.3 230 85.7
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.3e-86 323.6 232 85.3
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.7e-86 323.2 233 84.1
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.7e-86 323.2 230 84.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.2e-86 322.8 230 83.9
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.2e-86 322.8 230 83.9
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.2e-86 322.8 230 83.9
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 2.9e-86 322.4 230 85.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 2.9e-86 322.4 230 85.7
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.9e-86 322.4 228 85.5
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 6.4e-86 321.2 230 83.5
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 6.4e-86 321.2 230 83.5
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 6.4e-86 321.2 230 83.5
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 8.4e-86 320.9 229 86.5
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 8.4e-86 320.9 233 84.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.5
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.0
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.1e-85 320.5 230 83.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.1e-85 320.5 235 83.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-85 320.1 230 83.5
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.4e-85 320.1 230 83.5
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.4e-85 320.1 230 83.5
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.9e-85 319.7 230 83.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.4e-85 319.3 230 83.5
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.4e-85 319.3 230 83.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.4e-85 319.3 230 83.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.4e-85 319.3 230 85.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.4e-85 319.3 227 85.5
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.2e-85 318.5 230 82.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 5.4e-85 318.2 231 84.0
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 5.4e-85 318.2 232 83.6
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.1e-85 317.8 235 83.0
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 9.3e-85 317.4 230 83.0
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 9.3e-85 317.4 230 83.0
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 82.6
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 82.6
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 82.6
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.2e-84 317.0 230 83.0
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.2e-84 317.0 232 84.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.1e-84 316.2 230 81.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-84 316.2 230 83.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.7e-84 315.8 230 82.6
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 4.6e-84 315.1 230 83.0
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.3e-83 312.8 230 82.6
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 3.9e-83 312.0 230 82.6
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.5e-82 309.3 230 82.2
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.3e-81 307.0 230 81.3
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.8e-81 305.8 184 97.8
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 6.2e-81 304.7 288 61.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 8.1e-81 304.3 230 80.9
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 4.0e-80 302.0 189 94.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.4e-79 298.9 212 84.4
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 3.4e-79 298.9 230 79.6
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 7.6e-79 297.7 185 93.0
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.7e-78 296.6 185 92.4
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 3.8e-78 295.4 210 84.8
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 6.4e-78 294.7 179 95.5
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.3e-75 287.0 198 88.4
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 3.3e-74 282.3 236 76.3
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.3e-74 282.3 198 86.9
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.6e-73 280.0 185 88.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.1e-73 279.6 168 97.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 4.5e-71 271.9 185 88.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 8.4e-70 267.7 211 77.7
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.1e-69 267.3 198 85.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.1e-69 267.3 187 84.5
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 3.2e-69 265.8 230 71.7
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.9e-66 256.5 169 88.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.3e-66 255.8 231 70.1
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 2.8e-65 252.7 164 90.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.0e-63 246.5 180 81.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.3e-62 243.8 227 63.4
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-61 240.4 148 97.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 9.3e-61 237.7 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.0e-59 232.6 225 67.6
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.1e-56 224.2 178 78.7
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.4e-56 223.0 178 70.2
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.1e-56 222.6 137 97.1
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 4.1e-56 222.2 225 63.6
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 5.9e-55 218.4 160 72.5
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.6e-52 210.3 185 69.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-51 206.5 245 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.5e-50 203.8 153 81.7
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 5.7e-50 201.8 132 94.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 8.2e-49 198.0 162 75.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.3e-46 190.7 119 81.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.8e-46 189.1 139 71.9
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.7e-44 183.0 154 68.2
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 5.7e-34 148.7 127 63.0
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.7e-33 147.1 123 64.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.6e-31 139.8 230 44.3
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.2e-25 118.2 212 41.0
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.2e-18 97.8 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.5e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.8e-16 90.5 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 9.2e-08 61.6 109 44.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 7.8e-07 58.5 60 51.7


User provided reference genes

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