Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.7e-202 708.0 354 100.0
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.8e-186 655.2 354 93.5
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 7.3e-158 560.8 360 80.8
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 4.9e-154 548.1 362 77.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.9e-153 546.2 362 77.3
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.4e-113 413.7 359 60.4
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.4e-113 412.9 357 59.1
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 8.7e-111 404.4 336 59.5
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 8.2e-109 397.9 355 59.4
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.1e-100 370.9 348 58.0
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 4.5e-99 365.5 337 55.2
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.1e-97 360.9 362 52.5
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.2e-96 357.5 341 54.3
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.2e-96 357.5 334 55.7
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.8e-95 353.6 362 53.6
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 8.8e-95 351.3 362 54.7
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.1e-94 350.9 350 51.7
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 5.7e-94 348.6 364 51.6
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.8e-92 343.6 354 52.8
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 5.3e-92 342.0 344 53.8
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.2e-91 340.9 360 50.6
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 4.5e-91 339.0 343 53.1
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 1.3e-90 337.4 344 54.4
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.7e-90 337.0 338 54.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 3.8e-90 335.9 349 53.0
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 6.5e-90 335.1 360 50.3
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.1e-89 334.3 355 53.0
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 3.2e-89 332.8 353 51.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 4.2e-89 332.4 341 52.5
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 5.5e-89 332.0 356 49.2
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.2e-88 330.9 369 51.8
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.2e-88 330.9 369 51.8
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.2e-88 330.9 369 51.8
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.6e-88 330.5 361 51.8
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 3.6e-88 329.3 362 51.7
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.7e-88 328.9 349 51.3
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.9e-88 328.2 356 50.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 7.9e-88 328.2 353 51.3
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.8e-87 327.0 361 52.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.0e-87 326.2 359 51.5
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.9e-87 325.9 212 75.0
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 3.9e-87 325.9 340 51.8
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 3.9e-87 325.9 356 48.9
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 2.0e-86 323.6 231 71.9
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 2.0e-86 323.6 364 49.5
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 4.4e-86 322.4 367 49.0
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.7e-85 320.5 344 50.6
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 6.3e-85 318.5 340 51.2
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 2.6e-83 313.2 360 50.0
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 3.8e-82 309.3 374 47.6
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.5e-82 308.1 369 47.4
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 1.9e-81 307.0 344 48.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 4.2e-81 305.8 362 47.2
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 7.2e-81 305.1 345 49.0
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 7.2e-81 305.1 358 48.0
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 2.1e-80 303.5 347 48.1
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.0e-80 301.6 374 47.1
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 2.3e-79 300.1 321 49.8
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 5.2e-79 298.9 321 49.2
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.4e-76 290.0 339 46.3
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 7.0e-76 288.5 311 49.5
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 9.1e-76 288.1 339 45.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.0e-75 287.0 339 45.1
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 5.9e-75 285.4 360 44.7
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.0e-74 284.6 333 46.5
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.7e-74 283.9 354 46.9
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.9e-74 283.1 338 46.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 6.5e-74 282.0 337 44.5
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 1.5e-73 280.8 357 42.0
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 3.2e-73 279.6 340 45.3
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 5.5e-73 278.9 319 46.7
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 3.0e-71 273.1 339 44.5
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 8.8e-71 271.6 340 45.0
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 8.2e-69 265.0 311 45.3
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 3.1e-68 263.1 333 46.5
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 5.3e-68 262.3 290 48.6
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 5.3e-68 262.3 360 40.3
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.3e-66 257.7 354 45.5
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.7e-66 257.3 356 44.1
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 1.2e-64 251.1 333 42.3
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.2e-64 251.1 330 44.5
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 3.6e-64 249.6 339 41.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 6.1e-64 248.8 340 44.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.0e-63 248.1 323 44.0
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 3.0e-63 246.5 283 46.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.0e-62 243.8 337 39.2
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.4e-62 243.0 335 42.1
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 2.4e-60 236.9 341 39.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-60 236.9 341 39.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 2.4e-60 236.9 341 39.3
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.6e-59 234.2 268 50.4
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.7e-59 233.4 353 38.5
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 7.7e-59 231.9 339 38.9
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-58 230.7 336 38.7
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 2.3e-58 230.3 336 38.7
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 5.0e-58 229.2 325 42.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 4.7e-56 222.6 317 41.6
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.0e-55 221.5 259 46.7
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.7e-50 204.1 337 37.4
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 3.8e-50 203.0 331 36.6
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 4.3e-49 199.5 328 38.4
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.0e-43 180.6 351 35.3
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.0e-43 180.6 329 35.9
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.1e-40 170.6 278 41.4
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.6e-40 169.9 322 32.9
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 8.9e-39 165.2 181 48.1
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 4.4e-38 162.9 132 56.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 2.2e-37 160.6 229 38.0
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 2.9e-37 160.2 183 43.7
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 6.0e-35 152.5 321 30.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.3e-34 151.4 140 54.3
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-34 151.0 192 39.6
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 5.6e-33 146.0 322 32.6
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 7.3e-33 145.6 319 30.7
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.3e-26 124.8 140 42.9
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.8e-23 114.4 276 31.5
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 2.0e-22 110.9 132 40.9
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.7e-21 107.8 141 41.1
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 9.2e-20 102.1 109 44.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 9.2e-20 102.1 109 44.0
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-19 100.9 108 44.4
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 2.1e-19 100.9 108 44.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 4.6e-19 99.8 108 44.4
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 6.0e-19 99.4 109 44.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 6.6e-18 95.9 194 30.9
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 6.6e-18 95.9 108 44.4
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.9e-17 94.4 112 40.2
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-17 94.4 112 40.2
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 2.8e-16 90.5 191 32.5
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 3.6e-16 90.1 96 44.8
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 8.1e-16 89.0 93 45.2
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 4.4e-14 83.2 61 59.0
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 4.4e-14 83.2 80 47.5
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 1.2e-06 58.5 111 32.4


User provided reference genes

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