Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 5.6e-136 487.6 254 100.0
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 6.9e-118 427.6 255 89.0
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 7.4e-96 354.4 255 78.0
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.1e-94 350.5 255 77.3
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.5e-93 346.7 259 75.7
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.0e-93 346.3 257 77.4
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 3.4e-72 275.8 209 68.9
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.8e-71 272.7 209 65.6
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 4.8e-71 271.9 192 74.5
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 8.3e-71 271.2 190 70.5
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 8.3e-71 271.2 194 70.1
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 8.3e-71 271.2 255 65.5
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 7.0e-70 268.1 212 66.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 3.5e-69 265.8 243 59.3
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 5.9e-69 265.0 230 63.0
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.0e-68 264.2 242 58.7
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.3e-68 263.8 205 67.3
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.3e-68 263.8 195 70.3
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.2e-68 263.1 237 59.9
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 5.0e-68 261.9 208 66.8
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.1e-67 260.8 231 60.6
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.1e-67 260.8 213 63.4
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 3.2e-67 259.2 208 63.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 7.2e-67 258.1 207 66.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.2e-66 257.3 202 65.3
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.6e-66 256.9 193 67.9
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 2.7e-66 256.1 217 61.8
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 6.1e-66 255.0 190 70.5
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.4e-65 253.8 162 77.2
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.8e-65 253.4 207 64.3
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 2.3e-65 253.1 205 63.4
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 3.0e-65 252.7 214 61.7
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 3.0e-65 252.7 209 65.1
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 6.8e-65 251.5 239 59.8
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 8.8e-65 251.1 224 58.5
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 8.8e-65 251.1 193 68.4
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.0e-64 250.0 221 61.5
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 3.4e-64 249.2 240 55.8
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 4.4e-64 248.8 191 66.0
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 4.4e-64 248.8 241 59.8
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 7.5e-64 248.1 195 64.6
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 9.8e-64 247.7 190 66.3
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 9.8e-64 247.7 226 58.0
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 9.8e-64 247.7 224 59.8
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.7e-63 246.9 189 67.2
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 2.8e-63 246.1 183 69.4
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.7e-63 245.7 182 69.2
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 4.9e-63 245.4 201 65.2
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 6.3e-63 245.0 192 65.1
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 6.3e-63 245.0 163 73.6
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 6.3e-63 245.0 198 67.2
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.1e-62 244.2 240 58.8
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.4e-62 243.8 161 75.8
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.4e-62 243.8 214 60.3
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 9.2e-62 241.1 191 66.5
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.6e-61 240.4 250 55.2
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.6e-61 240.4 198 63.1
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.6e-61 240.4 193 66.8
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.7e-61 239.6 207 63.3
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 4.5e-61 238.8 199 64.3
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.0e-60 237.7 213 60.1
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-60 237.3 213 60.1
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.7e-60 236.9 232 56.9
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.3e-60 236.5 191 65.4
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.3e-60 236.5 200 63.5
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 6.6e-60 235.0 214 58.4
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 8.6e-60 234.6 214 60.7
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-59 234.2 213 59.6
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.1e-59 234.2 190 64.2
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 5.6e-59 231.9 191 66.0
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.3e-59 231.5 217 59.9
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 9.5e-59 231.1 204 60.3
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 9.5e-59 231.1 220 58.6
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.2e-58 230.7 196 62.8
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.6e-58 230.3 196 65.3
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.1e-58 229.9 196 63.3
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 3.6e-58 229.2 203 61.1
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 4.7e-58 228.8 207 59.9
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 6.1e-58 228.4 193 62.7
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 8.0e-58 228.0 197 63.5
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.0e-57 227.6 229 55.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 2.3e-57 226.5 193 63.7
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 2.3e-57 226.5 193 63.7
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 3.0e-57 226.1 193 63.2
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 3.0e-57 226.1 196 62.8
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.0e-57 225.7 211 56.9
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 8.9e-57 224.6 217 58.1
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 2.0e-56 223.4 188 60.1
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 2.6e-56 223.0 207 59.9
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 3.4e-56 222.6 159 67.9
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 4.4e-56 222.2 160 67.5
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 5.7e-56 221.9 165 65.5
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.8e-54 216.9 218 56.4
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 5.4e-54 215.3 161 67.7
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 9.2e-54 214.5 227 55.1
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 5.9e-53 211.8 156 67.9
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 7.8e-53 211.5 176 61.4
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.7e-52 210.3 152 71.7
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.0e-49 201.1 213 54.5
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-48 197.6 158 65.2
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 6.6e-44 181.8 193 53.9
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.5e-43 180.6 156 57.7
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.5e-43 180.6 156 57.7
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.2e-40 171.0 185 49.7
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 9.8e-40 167.9 212 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 2.4e-38 163.3 156 55.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.6e-37 160.6 212 45.8
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.6e-37 160.6 156 55.8
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 6.0e-37 158.7 154 53.9
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 3.1e-33 146.4 93 76.3
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 9.9e-32 141.4 158 47.5
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.2e-31 140.2 170 45.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 8.4e-31 138.3 156 46.2
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 3.5e-29 132.9 160 48.8
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 2.3e-28 130.2 82 74.4
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 1.1e-27 127.9 101 66.3
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.2e-25 119.0 81 71.6
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 6.9e-25 118.6 159 40.9
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.9e-23 113.2 130 50.8
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.9e-23 113.2 106 58.5
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 4.9e-23 112.5 130 50.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-21 107.1 125 51.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.8e-21 105.1 93 62.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.7e-20 104.0 69 69.6
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 4.8e-18 95.9 180 34.4
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-17 92.4 93 54.8
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 9.6e-11 71.6 63 61.9
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.8e-10 70.1 112 39.3
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.1e-10 68.6 62 58.1
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.0e-08 63.9 93 41.9
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 5.8e-08 62.4 211 24.6
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 5.8e-08 62.4 104 41.3
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 7.6e-08 62.0 211 24.6
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.7e-07 60.8 211 25.1
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.9e-07 60.1 211 25.1
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 4.9e-07 59.3 211 24.6
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 4.2e-06 56.2 122 30.3
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 5.5e-06 55.8 149 28.2
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 5.5e-06 55.8 121 30.6


User provided reference genes

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