Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.0e-125 451.4 228 100.0
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 6.4e-123 444.1 228 98.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.1e-109 398.7 230 88.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.6e-108 395.6 230 88.3
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.6e-108 395.6 230 88.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.3e-107 393.3 229 88.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 9.6e-103 377.1 230 87.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.4e-93 346.7 232 79.3
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 4.0e-93 345.1 231 77.1
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.4e-92 342.0 235 76.2
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.9e-91 338.2 234 75.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 6.4e-91 337.8 232 74.6
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.9e-90 336.3 234 75.6
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 9.3e-90 334.0 230 75.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 7.9e-89 330.9 235 72.8
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 8.7e-88 327.4 235 75.7
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.6e-86 323.2 236 73.3
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.8e-85 319.7 236 71.2
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.0e-84 316.2 232 70.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 5.8e-84 314.7 237 69.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 4.9e-83 311.6 229 70.7
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 8.4e-83 310.8 233 70.8
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.2e-82 308.9 229 68.6
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 7.1e-82 307.8 237 69.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 9.3e-82 307.4 225 69.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.0e-80 303.9 222 68.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.8e-80 303.1 238 67.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.3e-80 302.8 224 71.0
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.0e-80 302.4 238 67.2
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 5.1e-80 301.6 235 67.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.5e-79 299.3 230 68.7
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.3e-78 297.0 231 67.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.6e-78 296.6 229 67.2
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.6e-78 296.6 202 70.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.2e-78 296.2 203 72.9
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.2e-78 296.2 222 66.2
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.2e-78 296.2 227 67.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 4.8e-78 295.0 229 68.1
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.8e-78 295.0 230 66.1
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.3e-78 294.7 231 68.0
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.3e-78 294.7 232 65.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 8.2e-78 294.3 233 67.4
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.4e-77 293.5 238 67.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.4e-77 293.5 232 69.0
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.4e-77 293.5 233 67.4
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.8e-77 293.1 230 68.3
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.8e-77 293.1 229 68.6
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.1e-77 292.0 223 65.5
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 9.0e-77 290.8 233 67.0
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.2e-76 290.4 215 70.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.2e-76 290.4 182 75.8
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.2e-76 290.4 230 67.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.5e-76 290.0 230 69.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.0e-76 289.7 229 68.1
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.0e-76 289.7 226 65.9
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.4e-76 288.9 233 66.5
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.9e-76 288.1 231 67.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.7e-75 286.6 182 74.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.9e-75 285.8 203 69.0
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.9e-75 285.8 203 69.0
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.8e-75 285.4 219 69.4
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 8.5e-75 284.3 226 67.3
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.1e-74 283.9 182 73.1
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.1e-74 283.9 229 63.8
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.4e-74 283.5 232 64.7
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.5e-74 282.7 230 64.3
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 3.2e-74 282.3 236 64.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 7.2e-74 281.2 203 69.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 7.2e-74 281.2 203 69.0
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 7.2e-74 281.2 208 66.8
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 9.4e-74 280.8 203 69.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.2e-73 280.4 233 63.9
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.2e-73 280.4 228 64.0
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 4.6e-73 278.5 225 67.1
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.0e-72 277.3 229 62.9
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-72 276.2 229 62.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.0e-72 275.8 203 68.0
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.0e-72 275.8 227 63.9
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.9e-72 275.4 228 64.9
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 8.8e-72 274.2 234 65.0
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-71 273.5 229 62.0
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-71 273.5 223 62.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.0e-71 273.1 214 65.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.0e-71 273.1 229 61.6
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.0e-71 273.1 232 64.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 9.7e-71 270.8 193 68.4
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 9.7e-71 270.8 181 73.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 9.7e-71 270.8 225 65.3
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 9.7e-71 270.8 227 63.0
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.7e-70 270.0 222 63.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.2e-70 269.6 224 64.7
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 3.7e-70 268.9 186 69.9
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 3.7e-70 268.9 223 64.1
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 8.2e-70 267.7 229 62.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.1e-69 267.3 231 62.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.5e-68 263.5 225 61.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 4.2e-66 255.4 189 66.1
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.6e-65 253.4 227 58.1
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.6e-65 252.3 176 71.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 4.7e-65 251.9 224 62.9
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.9e-65 251.1 199 63.8
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.0e-64 250.8 184 67.9
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 7.4e-63 244.6 179 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 3.1e-61 239.2 180 66.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.1e-61 239.2 186 65.1
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.2e-60 237.3 172 73.8
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.7e-57 225.3 145 73.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.5e-55 220.3 130 80.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.7e-47 191.8 146 63.0
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.3e-46 190.7 146 63.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.2e-46 189.9 234 53.0
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 4.8e-46 188.7 147 60.5
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.3e-46 188.0 147 60.5
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.4e-45 187.2 147 59.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.4e-45 187.2 146 60.3
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.4e-45 186.4 143 62.2
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 3.1e-45 186.0 147 59.2
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 3.1e-45 186.0 147 59.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 3.1e-45 186.0 147 59.2
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.1e-45 185.7 147 59.9
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 4.1e-45 185.7 147 59.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 4.1e-45 185.7 147 59.2
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.7e-44 183.0 146 59.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 5.9e-44 181.8 145 57.9
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 5.0e-43 178.7 184 50.0
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.9e-42 176.8 146 56.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.0e-39 166.8 146 52.7
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-37 160.6 102 77.5
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.6e-36 157.1 161 48.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-34 151.0 106 65.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 2.1e-33 146.7 105 66.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.3e-30 137.5 232 43.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 8.3e-30 134.8 130 61.5
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.4e-29 134.0 155 43.9
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 9.2e-29 131.3 131 54.2
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 9.2e-29 131.3 178 41.0
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 3.5e-28 129.4 89 69.7
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.9e-28 128.6 155 44.5
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.3e-26 121.7 155 41.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-21 107.5 208 36.1
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.9e-21 107.1 150 36.7
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 3.2e-21 106.3 155 36.1
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 3.2e-21 106.3 198 34.3
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.6e-19 98.6 105 51.4
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 8.6e-19 98.2 71 60.6
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.9e-18 97.1 227 34.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.1e-17 93.6 67 70.1
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.7e-17 92.4 101 56.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.2e-14 83.6 104 41.3
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 3.3e-10 69.7 48 70.8
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.4e-08 64.3 59 50.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.8e-08 63.9 118 34.7
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.1e-08 63.2 84 38.1
SMO155G0005 Selaginella moellendorffii HOM05D004659 ORTHO05D378663 6.4e-06 55.5 44 59.1


User provided reference genes

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