Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004093g0020 Nicotiana tabacum HOM05D005044 ORTHO05D020187 1.1e-53 213.0 104 100.0
Nitab4.5_0000393g0090 Nicotiana tabacum HOM05D005044 ORTHO05D020187 1.6e-33 146.0 94 81.9
Peaxi162Scf01826g00011 Petunia axillaris HOM05D005044 ORTHO05D020187 7.4e-26 120.6 79 78.5
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 5.0e-22 107.8 82 70.7
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 5.0e-22 107.8 82 70.7
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 1.4e-21 106.3 82 69.5
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 5.5e-21 104.4 82 68.3
unitig_22.g5954 Utricularia gibba HOM05D005044 ORTHO05D006799 9.3e-21 103.6 85 64.7
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 1.6e-20 102.8 85 64.7
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 1.6e-20 102.8 85 64.7
Oeu018178.1 Olea europaea HOM05D005044 ORTHO05D006799 2.1e-20 102.4 85 62.4
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 3.5e-20 101.7 82 65.9
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 4.6e-20 101.3 83 65.1
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 1.0e-19 100.1 82 64.6
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 1.0e-19 100.1 85 64.7
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 2.3e-19 99.0 85 60.0
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 2.3e-19 99.0 85 60.0
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 2.3e-19 99.0 82 61.0
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 3.0e-19 98.6 82 64.6
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 3.0e-19 98.6 79 64.6
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 3.9e-19 98.2 85 60.0
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 3.9e-19 98.2 82 63.4
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 3.9e-19 98.2 82 64.6
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 5.1e-19 97.8 82 63.4
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 5.1e-19 97.8 82 62.2
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 5.1e-19 97.8 85 60.0
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 8.7e-19 97.1 82 62.2
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 8.7e-19 97.1 82 62.2
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 1.5e-18 96.3 82 61.0
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 1.5e-18 96.3 82 62.2
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 1.5e-18 96.3 82 62.2
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 1.5e-18 96.3 79 63.3
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 1.5e-18 96.3 82 61.0
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 1.9e-18 95.9 86 59.3
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 1.9e-18 95.9 81 61.7
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 2.5e-18 95.5 79 63.3
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 3.3e-18 95.1 82 61.0
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 3.3e-18 95.1 82 61.0
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 3.3e-18 95.1 82 62.2
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 3.3e-18 95.1 82 59.8
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 7.4e-18 94.0 82 61.0
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 7.4e-18 94.0 82 59.8
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 9.7e-18 93.6 82 61.0
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 1.6e-17 92.8 83 59.0
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 1.6e-17 92.8 83 59.0
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 1.6e-17 92.8 83 59.0
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 3.7e-17 91.7 82 61.0
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 3.7e-17 91.7 82 59.8
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 4.8e-17 91.3 82 59.8
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 6.3e-17 90.9 79 59.5
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 6.3e-17 90.9 85 57.6
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 8.2e-17 90.5 83 57.8
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 8.2e-17 90.5 83 57.8
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 1.1e-16 90.1 82 61.0
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 1.1e-16 90.1 83 57.8
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 1.1e-16 90.1 79 59.5
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.4e-16 89.7 47 87.2
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 1.4e-16 89.7 86 58.1
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.8e-16 89.4 47 89.4
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 3.1e-16 88.6 78 61.5
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 4.1e-16 88.2 79 58.2
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 5.3e-16 87.8 44 90.9
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 6.9e-16 87.4 82 57.3
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 9.0e-16 87.0 86 53.5
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 9.0e-16 87.0 79 57.0
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 9.0e-16 87.0 82 56.1
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 1.5e-15 86.3 83 55.4
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 1.5e-15 86.3 86 51.2
vmacro14878 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.5e-15 86.3 44 90.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.0e-15 85.9 75 60.0
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 2.0e-15 85.9 82 53.7
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 2.0e-15 85.9 82 53.7
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 2.6e-15 85.5 82 53.7
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-15 85.5 44 88.6
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-15 85.5 44 88.6
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 3.4e-15 85.1 84 56.0
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 4.5e-15 84.7 83 51.8
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 4.5e-15 84.7 70 60.0
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 5.9e-15 84.3 83 51.8
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 5.9e-15 84.3 82 54.9
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 5.9e-15 84.3 44 88.6
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 5.9e-15 84.3 78 57.7
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 1.0e-14 83.6 80 52.5
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 1.3e-14 83.2 82 52.4
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 1.3e-14 83.2 79 55.7
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 1.3e-14 83.2 82 54.9
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 1.7e-14 82.8 77 57.1
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 2.2e-14 82.4 41 92.7
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.9e-14 82.0 82 54.9
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.8e-14 81.6 70 61.4
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 3.8e-14 81.6 44 84.1
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 3.8e-14 81.6 41 90.2
A02p37520 Brassica napus HOM05D005044 ORTHO05D020187 6.5e-14 80.9 63 65.1
Sabra02G0036800 Salix brachista HOM05D005044 ORTHO05D006799 6.5e-14 80.9 52 75.0
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 8.5e-14 80.5 82 51.2
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 8.5e-14 80.5 82 51.2
A09p47560 Brassica napus HOM05D005044 ORTHO05D020187 1.1e-13 80.1 46 80.4
BraA09t40212Z Brassica rapa HOM05D005044 ORTHO05D006799 1.1e-13 80.1 46 80.4
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 1.4e-13 79.7 78 52.6
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 1.9e-13 79.3 81 50.6
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 3.2e-13 78.6 79 49.4
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 5.5e-13 77.8 44 77.3
HPP92_026599 Vanilla planifolia HOM05D005044 ORTHO05D006799 9.4e-13 77.0 40 87.5
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 1.2e-12 76.6 44 79.5
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 5.1e-11 71.2 44 68.2
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.0e-10 69.3 44 63.6
CSS0023052 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D020187 5.7e-10 67.8 64 56.2
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 1.4e-08 63.2 60 56.7
CSS0028198 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D020187 6.9e-08 60.8 70 51.4
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 2.6e-07 58.9 77 41.6
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 4.5e-07 58.2 44 56.8
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 5.9e-07 57.8 75 50.7
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 2.9e-06 55.5 29 89.7
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 6.5e-06 54.3 44 56.8


User provided reference genes

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