Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.6e-152 542.0 266 100.0
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.1e-113 413.7 266 80.5
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.6e-107 392.5 266 75.6
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 4.4e-107 391.7 266 75.6
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 7.5e-107 391.0 266 75.2
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.2e-106 389.4 266 75.9
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 8.3e-106 387.5 266 74.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.5e-99 366.7 266 71.1
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 4.4e-99 365.2 266 71.1
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.7e-99 364.8 266 71.1
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.7e-99 364.8 266 71.1
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 9.8e-99 364.0 266 71.1
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.9e-98 362.5 266 69.9
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.9e-98 362.5 266 69.9
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-97 359.8 266 69.5
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 3.2e-97 359.0 266 68.8
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 3.5e-96 355.5 266 69.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.0e-95 354.0 266 69.9
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.3e-95 353.6 266 69.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.3e-95 353.6 266 68.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.7e-95 353.2 266 68.4
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.3e-95 352.8 266 67.3
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.3e-95 352.8 266 68.0
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.9e-95 352.1 267 68.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 3.9e-95 352.1 266 68.8
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 5.0e-95 351.7 266 69.9
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 4.3e-94 348.6 266 67.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.8e-93 345.9 266 65.4
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.1e-92 344.0 266 66.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.4e-92 343.6 266 65.8
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.3e-92 342.8 266 66.9
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 3.1e-92 342.4 266 65.0
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.0e-92 342.0 266 66.5
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 5.2e-92 341.7 266 66.2
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.9e-92 340.9 266 65.8
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.9e-92 340.9 266 65.8
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 8.9e-92 340.9 266 64.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 2.0e-91 339.7 266 65.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.6e-91 339.3 266 65.8
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 9.8e-91 337.4 267 64.4
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.8e-91 337.4 266 65.0
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.3e-90 337.0 266 65.4
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.9e-90 335.9 266 65.8
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 4.9e-90 335.1 266 64.3
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 4.9e-90 335.1 266 63.9
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.9e-90 335.1 266 64.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.4e-89 333.6 266 65.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.4e-89 333.6 266 65.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.4e-89 333.6 266 64.7
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 2.4e-89 332.8 266 64.7
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.2e-88 330.5 266 64.7
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.2e-88 330.5 266 65.0
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 3.5e-88 328.9 267 65.2
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 3.5e-88 328.9 266 65.4
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.6e-88 328.6 266 64.7
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 4.6e-88 328.6 266 65.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 6.0e-88 328.2 266 64.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.0e-87 327.4 266 62.8
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.3e-87 327.0 266 64.3
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 3.9e-87 325.5 267 63.7
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 8.6e-87 324.3 321 55.8
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.5e-86 322.8 266 62.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 2.1e-85 319.7 266 62.8
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 6.2e-85 318.2 299 57.9
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 8.1e-85 317.8 266 61.7
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.4e-84 317.0 266 60.2
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.4e-84 317.0 249 66.7
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 6.8e-84 314.7 266 62.0
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.2e-83 313.9 240 67.9
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.5e-83 313.5 266 60.5
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 3.4e-83 312.4 240 66.7
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.4e-83 312.4 266 60.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 7.5e-83 311.2 266 60.2
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 9.9e-83 310.8 266 60.5
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.2e-82 309.7 263 60.8
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.4e-81 307.0 266 59.4
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 3.2e-81 305.8 266 59.0
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.2e-81 305.8 266 59.0
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 4.1e-81 305.4 266 59.0
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 4.1e-81 305.4 266 59.0
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 5.4e-81 305.1 266 59.8
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 9.2e-81 304.3 266 58.6
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 9.2e-81 304.3 266 59.4
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.2e-80 303.9 266 59.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.1e-80 303.1 260 62.3
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 2.1e-80 303.1 269 60.6
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 2.7e-80 302.8 266 59.8
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 3.5e-80 302.4 266 60.2
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 6.0e-80 301.6 266 59.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 7.8e-80 301.2 266 58.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.7e-79 300.1 266 58.6
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 5.6e-78 295.0 267 59.9
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 7.3e-78 294.7 266 58.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.1e-76 290.8 258 60.1
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 3.1e-76 289.3 266 56.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.0e-76 288.9 266 57.9
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 5.2e-76 288.5 266 56.8
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 5.2e-76 288.5 268 57.1
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 5.2e-76 288.5 268 56.7
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 2.6e-75 286.2 266 58.6
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 2.2e-74 283.1 266 58.6
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 5.4e-73 278.5 266 55.3
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 7.1e-73 278.1 266 55.6
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.2e-72 277.3 266 54.9
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.9e-70 270.0 266 56.0
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 2.1e-69 266.5 220 63.2
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 8.1e-69 264.6 266 57.5
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 6.9e-68 261.5 284 54.2
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 6.9e-68 261.5 284 54.2
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 8.4e-66 254.6 265 50.6
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.3e-63 247.3 267 51.3
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.3e-63 247.3 268 51.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.3e-63 247.3 243 53.1
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.3e-63 246.5 266 53.4
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.8e-60 236.9 215 59.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 9.0e-60 234.6 250 50.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 2.2e-58 229.9 270 50.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 3.8e-58 229.2 287 48.8
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.8e-55 220.3 286 45.1
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.4e-52 209.9 267 43.4
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.9e-50 203.0 207 53.1
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.3e-47 194.1 267 42.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.4e-44 184.1 147 61.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 2.4e-44 183.3 268 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 4.2e-41 172.6 268 38.4
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.4e-36 156.8 123 64.2
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.4e-36 156.8 123 64.2
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 6.9e-36 155.2 265 37.0
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 9.0e-36 154.8 243 37.4
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 5.9e-35 152.1 153 54.2
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 2.5e-33 146.7 273 35.2
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.5e-30 137.5 242 40.1
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 6.3e-29 132.1 167 46.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.1e-24 117.1 97 58.8
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.1e-20 102.8 51 92.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.1e-20 102.8 51 92.2
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.3e-20 102.4 57 87.7
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.1e-20 101.7 51 92.2
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 7.2e-17 92.0 82 50.0
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.1e-16 90.5 90 47.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.7e-16 90.1 128 43.8
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.7e-16 90.1 81 58.0
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.8e-15 87.4 145 41.4
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.7e-13 79.7 51 80.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 6.3e-13 79.0 51 74.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 7.7e-11 72.0 64 60.9
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.0e-10 71.6 255 27.1
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.5e-09 67.0 94 47.9
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 9.4e-09 65.1 49 65.3
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 9.4e-09 65.1 51 62.7


User provided reference genes

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