Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004084g0020 Nicotiana tabacum HOM05D000053 ORTHO05D000035 2.1e-129 465.7 229 100.0
Nitab4.5_0000517g0130 Nicotiana tabacum HOM05D000053 ORTHO05D000035 4.5e-44 182.2 130 72.3
PGSC0003DMG400003195 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.2e-37 159.5 136 60.3
Solyc07g005150.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 9.2e-37 157.9 132 61.4
Sopen07g001290 Solanum pennellii HOM05D000053 ORTHO05D000035 6.0e-36 155.2 131 61.1
CAN.G1167.1 Capsicum annuum HOM05D000053 ORTHO05D000035 3.0e-35 152.9 130 59.2
Nitab4.5_0001032g0090 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.0e-27 126.3 131 55.0
PGSC0003DMG400017968 Solanum tuberosum HOM05D000053 ORTHO05D000035 6.0e-20 102.1 140 37.1
Solyc12g100010.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 6.6e-19 98.6 139 36.0
CAN.G484.17 Capsicum annuum HOM05D000053 ORTHO05D000035 8.6e-19 98.2 140 36.4
PGSC0003DMG401002869 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.1e-18 97.8 140 35.7
PGSC0003DMG400023867 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.8e-16 90.5 137 35.0
CAN.G1002.21 Capsicum annuum HOM05D000053 ORTHO05D000035 3.1e-16 89.7 142 33.1
Nitab4.5_0001032g0120 Nicotiana tabacum HOM05D000053 ORTHO05D012842 1.2e-15 87.8 51 82.4
PGSC0003DMG400005539 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.4e-15 86.3 137 35.0
PGSC0003DMG400005538 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.7e-14 84.0 134 34.3
Thecc.07G018900 Theobroma cacao HOM05D000053 ORTHO05D000035 2.2e-14 83.6 127 40.9
QL07p003250 Quercus lobata HOM05D000053 ORTHO05D000035 1.4e-13 80.9 107 43.9
TWI73G0933 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.4e-13 80.9 128 34.4
Nitab4.5_0006164g0060 Nicotiana tabacum HOM05D000053 ORTHO05D000035 7.1e-13 78.6 138 31.2
TAR622G1251 Trochodendron aralioides HOM05D000053 ORTHO05D000035 2.7e-12 76.6 136 37.5
Nitab4.5_0004389g0080 Nicotiana tabacum HOM05D000053 ORTHO05D000035 7.8e-12 75.1 114 37.7
QL08p013111 Quercus lobata HOM05D000053 ORTHO05D000035 1.0e-11 74.7 122 39.3
Solyc12g040740.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.0e-11 74.7 126 34.9
TWI38G0397 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.3e-11 74.3 133 34.6
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 1.7e-11 73.9 158 30.4
TWI73G0994 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 1.7e-11 73.9 127 33.9
Thecc.07G121500 Theobroma cacao HOM05D000053 ORTHO05D000035 3.0e-11 73.2 128 34.4
Thecc.10G132800 Theobroma cacao HOM05D000053 ORTHO05D000035 3.0e-11 73.2 134 37.3
TWI38G1191 Tripterygium wilfordii HOM05D000053 ORTHO05D000035 3.9e-11 72.8 132 34.1
Duzib093G1648 Durio zibethinus HOM05D000053 ORTHO05D000035 5.1e-11 72.4 136 33.8
QL04p064871 Quercus lobata HOM05D000053 ORTHO05D000035 6.6e-11 72.0 123 38.2
Peaxi162Scf00062g02014 Petunia axillaris HOM05D000053 ORTHO05D000035 8.7e-11 71.6 82 46.3
QL01p030125 Quercus lobata HOM05D000053 ORTHO05D000035 8.7e-11 71.6 124 38.7
DCAR_001832 Daucus carota HOM05D000053 ORTHO05D000035 1.1e-10 71.2 134 35.1
QL04p073518 Quercus lobata HOM05D000053 ORTHO05D000035 1.1e-10 71.2 123 39.0
BcaB04g17640 Brassica carinata HOM05D000053 ORTHO05D000035 2.5e-10 70.1 114 38.6
Duzib177G0955 Durio zibethinus HOM05D000053 ORTHO05D000035 2.5e-10 70.1 126 34.1
Nitab4.5_0003736g0090 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.3e-10 69.7 115 37.4
QL10p041485 Quercus lobata HOM05D000053 ORTHO05D000448 3.3e-10 69.7 140 32.1
Peaxi162Scf00306g00043 Petunia axillaris HOM05D000053 ORTHO05D000035 4.3e-10 69.3 137 34.3
THA.LOC104813299 Tarenaya hassleriana HOM05D000053 ORTHO05D000035 5.6e-10 68.9 140 32.1
Cfa011542 Carpinus fangiana HOM05D000053 ORTHO05D000448 9.6e-10 68.2 113 34.5
Peaxi162Scf00323g00026 Petunia axillaris HOM05D000053 ORTHO05D000035 1.3e-09 67.8 79 43.0
PGSC0003DMG400021067 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.3e-09 67.8 84 42.9
Gorai.009G367600 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.1e-09 67.0 139 31.7
Nitab4.5_0004389g0070 Nicotiana tabacum HOM05D000053 ORTHO05D000035 2.1e-09 67.0 82 43.9
Thecc.07G159400 Theobroma cacao HOM05D000053 ORTHO05D000035 2.1e-09 67.0 136 30.9
CAN.G484.19 Capsicum annuum HOM05D000053 ORTHO05D000035 2.8e-09 66.6 128 31.2
Nitab4.5_0002757g0100 Nicotiana tabacum HOM05D000053 ORTHO05D000035 2.8e-09 66.6 82 43.9
Thecc.07G159300 Theobroma cacao HOM05D000053 ORTHO05D000035 2.8e-09 66.6 127 34.6
A08p06550 Brassica napus HOM05D000053 ORTHO05D000035 3.6e-09 66.2 114 36.8
DCAR_012081 Daucus carota HOM05D000053 ORTHO05D000035 3.6e-09 66.2 133 34.6
Nitab4.5_0023806g0010 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.6e-09 66.2 82 43.9
Thecc.07G019400 Theobroma cacao HOM05D000053 ORTHO05D000035 3.6e-09 66.2 125 36.0
QL10p041191 Quercus lobata HOM05D000053 ORTHO05D000448 4.8e-09 65.9 140 30.7
CAN.G274.25 Capsicum annuum HOM05D000053 ORTHO05D000035 6.2e-09 65.5 158 29.7
COL.COLO4_09799 Corchorus olitorius HOM05D000053 ORTHO05D000035 8.1e-09 65.1 100 41.0
DCAR_012065 Daucus carota HOM05D000053 ORTHO05D000035 8.1e-09 65.1 134 35.8
Duzib268G1626 Durio zibethinus HOM05D000053 ORTHO05D000035 1.1e-08 64.7 129 34.9
CAN.G533.3 Capsicum annuum HOM05D000053 ORTHO05D000001 1.4e-08 64.3 119 36.1
CAN.G484.15 Capsicum annuum HOM05D000053 ORTHO05D000035 1.8e-08 63.9 99 38.4
Ciclev10023754m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.8e-08 63.9 118 34.7
Haze_12658 Corylus avellana HOM05D000053 ORTHO05D000035 1.8e-08 63.9 98 35.7
Sp7g11700 Schrenkiella parvula HOM05D000053 ORTHO05D000035 1.8e-08 63.9 106 37.7
Solyc12g099950.3 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.8e-08 63.9 84 40.5
Solyc12g100030.2 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.8e-08 63.9 85 38.8
Peaxi162Scf00062g00217 Petunia axillaris HOM05D000053 ORTHO05D000035 2.4e-08 63.5 82 39.0
QL08p015947 Quercus lobata HOM05D000053 ORTHO05D000448 2.4e-08 63.5 146 29.5
CAN.G575.7 Capsicum annuum HOM05D000053 ORTHO05D000035 3.1e-08 63.2 163 29.4
Medtr5g086600 Medicago truncatula HOM05D000053 ORTHO05D000035 3.1e-08 63.2 134 34.3
DCAR_004682 Daucus carota HOM05D000053 ORTHO05D000035 4.0e-08 62.8 121 34.7
Cfa017122 Carpinus fangiana HOM05D000053 ORTHO05D000448 5.3e-08 62.4 114 33.3
Ciclev10011057m.g Citrus clementina HOM05D000053 ORTHO05D000448 5.3e-08 62.4 126 28.6
Cc01_g08180 Coffea canephora HOM05D000053 ORTHO05D000035 5.3e-08 62.4 134 32.8
Duzib212G0932 Durio zibethinus HOM05D000053 ORTHO05D000448 6.9e-08 62.0 112 33.9
Gohir.D05G380501 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.9e-08 62.0 93 38.7
QL08p005311 Quercus lobata HOM05D000053 ORTHO05D000035 6.9e-08 62.0 131 35.1
QL10p041208 Quercus lobata HOM05D000053 ORTHO05D000448 6.9e-08 62.0 140 30.0
Thecc.01G195200 Theobroma cacao HOM05D000053 ORTHO05D000448 6.9e-08 62.0 137 32.8
QL04p080539 Quercus lobata HOM05D000053 ORTHO05D000035 9.0e-08 61.6 111 36.9
Sc03g0011200 Simmondsia chinensis HOM05D000053 ORTHO05D000035 9.0e-08 61.6 112 40.2
Sopen12g034640 Solanum pennellii HOM05D000053 ORTHO05D000035 9.0e-08 61.6 60 43.3
PGSC0003DMG401004726 Solanum tuberosum HOM05D000053 ORTHO05D000035 9.0e-08 61.6 84 40.5
Cc11_g00880 Coffea canephora HOM05D000053 ORTHO05D000035 1.2e-07 61.2 128 31.2
Duzib093G2016 Durio zibethinus HOM05D000053 ORTHO05D000448 1.2e-07 61.2 140 30.0
Nitab4.5_0000444g0170 Nicotiana tabacum HOM05D000053 ORTHO05D000448 1.2e-07 61.2 138 31.2
Peaxi162Scf00062g00928 Petunia axillaris HOM05D000053 ORTHO05D000035 1.2e-07 61.2 85 41.2
QL08p005375 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-07 61.2 131 35.1
QL09p046045 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-07 61.2 123 35.0
BraA08t32670Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-07 60.8 114 35.1
Dinv18507 Davidia involucrata HOM05D000053 ORTHO05D000448 1.5e-07 60.8 139 28.8
PGSC0003DMG400015824 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.5e-07 60.8 51 51.0
CAN.G520.28 Capsicum annuum HOM05D000053 ORTHO05D000035 2.0e-07 60.5 51 49.0
Haze_24150 Corylus avellana HOM05D000053 ORTHO05D000448 2.0e-07 60.5 120 34.2
PGSC0003DMG400023863 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.0e-07 60.5 70 42.9
Peaxi162Scf00023g01026 Petunia axillaris HOM05D000053 ORTHO05D000035 2.6e-07 60.1 121 30.6
QL08p006319 Quercus lobata HOM05D000053 ORTHO05D000035 2.6e-07 60.1 134 34.3
PGSC0003DMG400014463 Solanum tuberosum HOM05D000053 ORTHO05D000035 2.6e-07 60.1 56 44.6
BraA01t02223Z Brassica rapa HOM05D000053 ORTHO05D000035 3.4e-07 59.7 78 41.0
CAN.G1002.25 Capsicum annuum HOM05D000053 ORTHO05D000035 3.4e-07 59.7 84 36.9
CARHR253920 Cardamine hirsuta HOM05D000053 ORTHO05D000035 3.4e-07 59.7 116 33.6
Nitab4.5_0001925g0160 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.4e-07 59.7 79 40.5
Thecc.10G166700 Theobroma cacao HOM05D000053 ORTHO05D000035 3.4e-07 59.7 129 29.5
CAN.G484.14 Capsicum annuum HOM05D000053 ORTHO05D000035 4.4e-07 59.3 81 40.7
Gohir.D02G023200 Gossypium hirsutum HOM05D000053 ORTHO05D000448 4.4e-07 59.3 136 29.4
HanXRQChr10g0286951 Helianthus annuus HOM05D000053 ORTHO05D000448 4.4e-07 59.3 118 34.7
Peaxi162Scf00014g00029 Petunia axillaris HOM05D000053 ORTHO05D000448 4.4e-07 59.3 137 28.5
Thecc.07G019200 Theobroma cacao HOM05D000053 ORTHO05D000035 4.4e-07 59.3 123 35.0
COL.COLO4_17551 Corchorus olitorius HOM05D000053 ORTHO05D000035 5.8e-07 58.9 119 34.5
Nitab4.5_0001925g0170 Nicotiana tabacum HOM05D000053 ORTHO05D000035 5.8e-07 58.9 79 41.8
GSVIVG01034788001 Vitis vinifera HOM05D000053 ORTHO05D000035 5.8e-07 58.9 107 33.6
CAN.G484.10 Capsicum annuum HOM05D000053 ORTHO05D000035 7.6e-07 58.5 122 30.3
CAN.G575.10 Capsicum annuum HOM05D000053 ORTHO05D000035 7.6e-07 58.5 79 39.2
Gorai.012G117000 Gossypium raimondii HOM05D000053 ORTHO05D000448 7.6e-07 58.5 118 33.1
arahy.Tifrunner.gnm1.ann1.N7FDKN Arachis hypogaea HOM05D000053 ORTHO05D000448 9.9e-07 58.2 76 42.1
Cfa011545 Carpinus fangiana HOM05D000053 ORTHO05D000448 9.9e-07 58.2 112 31.2
CAN.G1002.26 Capsicum annuum HOM05D000053 ORTHO05D000035 1.3e-06 57.8 122 32.8
Duzib268G1127 Durio zibethinus HOM05D000053 ORTHO05D000035 1.3e-06 57.8 148 32.4
Sp4g15360 Schrenkiella parvula HOM05D000053 ORTHO05D000035 1.3e-06 57.8 134 29.9
Thecc.05G198500 Theobroma cacao HOM05D000053 ORTHO05D000035 1.7e-06 57.4 133 28.6
CAN.G551.88 Capsicum annuum HOM05D000053 ORTHO05D000035 2.2e-06 57.0 103 38.8
Nitab4.5_0004940g0080 Nicotiana tabacum HOM05D002262 ORTHO05D000482 2.2e-06 57.0 78 34.6
Peaxi162Scf00434g00027 Petunia axillaris HOM05D000053 ORTHO05D000448 2.2e-06 57.0 86 32.6
AL7G42710 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 2.9e-06 56.6 77 39.0
arahy.Tifrunner.gnm1.ann1.RES0SR Arachis hypogaea HOM05D000053 ORTHO05D000035 2.9e-06 56.6 111 39.6
CsaV3_6G006670 Cucumis sativus L. HOM05D000053 ORTHO05D000035 2.9e-06 56.6 130 31.5
DCAR_005187 Daucus carota HOM05D000053 ORTHO05D000035 2.9e-06 56.6 125 34.4
Gohir.D05G381500 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.9e-06 56.6 114 34.2
Manes.03G091100 Manihot esculenta HOM05D000053 ORTHO05D000035 2.9e-06 56.6 123 32.5
Nitab4.5_0002329g0040 Nicotiana tabacum HOM05D000053 ORTHO05D000035 2.9e-06 56.6 93 37.6
Solyc12g100020.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 2.9e-06 56.6 84 36.9
Aa31sc72G20 Aethionema arabicum HOM05D000053 ORTHO05D000035 3.8e-06 56.2 113 32.7
A05p12540 Brassica napus HOM05D000053 ORTHO05D000035 3.8e-06 56.2 78 37.2
COL.COLO4_20210 Corchorus olitorius HOM05D000053 ORTHO05D000448 3.8e-06 56.2 114 32.5
Haze_16211 Corylus avellana HOM05D000053 ORTHO05D000448 3.8e-06 56.2 139 30.2
Duzib213G0626 Durio zibethinus HOM05D000053 ORTHO05D000035 3.8e-06 56.2 112 36.6
QL10p058001 Quercus lobata HOM05D000053 ORTHO05D000035 3.8e-06 56.2 127 32.3
AL4G28630 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 4.9e-06 55.8 116 31.0
BolC4t23192H Brassica oleracea HOM05D000053 ORTHO05D000035 4.9e-06 55.8 78 37.2
ECA247G2038 Erigeron canadensis HOM05D003109 ORTHO05D004733 4.9e-06 55.8 133 26.3
PGSC0003DMG400017966 Solanum tuberosum HOM05D000053 ORTHO05D000035 4.9e-06 55.8 84 35.7
TPR.G30847 Trifolium pratense HOM05D000053 ORTHO05D000448 4.9e-06 55.8 75 37.3
AL3G40700 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 6.4e-06 55.5 138 27.5
BcaC02g11370 Brassica carinata HOM05D000053 ORTHO05D000035 6.4e-06 55.5 115 32.2
C04p16490 Brassica napus HOM05D000053 ORTHO05D000035 6.4e-06 55.5 115 32.2
Lj5C206G2 Lonicera japonica HOM05D000053 ORTHO05D030004 6.4e-06 55.5 61 41.0
Peaxi162Scf00299g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 6.4e-06 55.5 84 36.9
Peaxi162Scf00299g00111 Petunia axillaris HOM05D000053 ORTHO05D000035 6.4e-06 55.5 84 36.9
Peaxi162Scf00646g00019 Petunia axillaris HOM05D000053 ORTHO05D000035 6.4e-06 55.5 84 36.9
QL04p073597 Quercus lobata HOM05D000053 ORTHO05D000035 6.4e-06 55.5 102 33.3
BcaC07g37321 Brassica carinata HOM05D000053 ORTHO05D000035 8.4e-06 55.1 76 43.4
BcaNung00359 Brassica carinata HOM05D000053 ORTHO05D000035 8.4e-06 55.1 127 29.1
C04p16350 Brassica napus HOM05D000053 ORTHO05D000035 8.4e-06 55.1 78 37.2
C08p07590 Brassica napus HOM05D000053 ORTHO05D000035 8.4e-06 55.1 76 43.4
BolC8t47606H Brassica oleracea HOM05D000053 ORTHO05D000035 8.4e-06 55.1 76 43.4
BraA05t20192Z Brassica rapa HOM05D000053 ORTHO05D000035 8.4e-06 55.1 78 37.2
Medtr5g087080 Medicago truncatula HOM05D000053 ORTHO05D000035 8.4e-06 55.1 128 35.2


User provided reference genes

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