Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.4e-62 242.7 117 100.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.4e-59 230.3 117 95.7
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 4.2e-54 214.5 110 90.9
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 4.2e-54 214.5 110 90.9
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 2.1e-53 212.2 110 90.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 6.1e-53 210.7 114 86.0
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.0e-53 210.3 110 88.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.1e-49 199.9 105 87.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.7e-48 195.3 110 84.5
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.1e-46 189.9 115 79.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 5.2e-44 181.0 112 75.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 8.8e-44 180.3 105 81.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.4e-43 178.3 87 92.0
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.4e-43 178.3 105 78.1
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.4e-43 177.9 107 77.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.4e-43 177.9 107 77.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 2.8e-42 175.3 103 77.7
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 8.3e-42 173.7 115 72.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 2.4e-41 172.2 108 76.9
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.4e-41 172.2 105 74.3
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 7.0e-41 170.6 111 73.0
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.6e-40 169.5 109 71.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.0e-40 169.1 101 76.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.7e-40 168.7 112 69.6
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.5e-40 167.9 115 68.7
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 5.9e-40 167.5 116 67.2
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 7.7e-40 167.2 111 73.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 7.7e-40 167.2 108 72.2
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.3e-39 166.4 112 68.8
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.7e-39 166.0 104 75.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.7e-39 166.0 111 70.3
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.3e-39 165.6 108 72.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.3e-39 165.6 108 72.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.3e-39 165.6 106 73.6
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.5e-38 162.2 107 70.1
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.5e-38 162.2 111 66.7
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 4.2e-38 161.4 105 72.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 5.5e-38 161.0 111 65.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-37 159.8 111 65.8
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-37 159.8 106 68.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.2e-37 159.8 117 65.8
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.6e-37 159.5 111 68.5
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.8e-37 158.7 111 66.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.8e-37 158.7 118 63.6
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 3.6e-37 158.3 105 70.5
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 6.1e-37 157.5 110 65.5
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 8.0e-37 157.1 100 72.0
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.0e-37 157.1 111 64.9
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 104 70.2
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.3e-36 155.6 117 66.7
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.0e-36 155.2 115 66.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 3.0e-36 155.2 106 67.0
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 3.0e-36 155.2 118 64.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 3.0e-36 155.2 119 65.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 4.0e-36 154.8 111 66.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.0e-36 154.8 102 68.6
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 4.0e-36 154.8 98 76.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 5.2e-36 154.5 95 74.7
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.2e-36 154.5 112 65.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 104 71.2
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 6.8e-36 154.1 102 73.5
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.8e-36 154.1 98 75.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.2e-35 153.3 104 70.2
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-35 152.9 111 64.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.5e-35 152.9 103 68.9
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 98 74.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 98 74.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.5e-35 152.9 101 69.3
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.6e-35 152.1 97 73.2
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.6e-35 152.1 95 72.6
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.6e-35 152.1 98 74.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.4e-35 151.8 98 73.5
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.4e-35 151.4 103 68.9
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 4.4e-35 151.4 109 65.1
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 5.7e-35 151.0 105 67.6
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 7.5e-35 150.6 117 62.4
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 7.5e-35 150.6 103 68.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 9.8e-35 150.2 104 67.3
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 9.8e-35 150.2 103 68.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 9.8e-35 150.2 106 65.1
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.3e-34 149.8 115 63.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.3e-34 149.8 95 72.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.7e-34 149.4 95 73.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.7e-34 149.4 107 65.4
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.7e-34 149.4 101 70.3
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.2e-34 149.1 95 72.6
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.2e-34 149.1 103 68.0
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.2e-34 149.1 98 73.5
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.7e-34 148.3 117 63.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.7e-34 148.3 97 69.1
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.9e-34 147.9 115 61.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.9e-34 147.9 115 61.7
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.9e-34 147.9 103 67.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 4.9e-34 147.9 101 67.3
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.9e-34 147.9 100 67.0
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.3e-34 147.5 118 64.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 8.3e-34 147.1 115 61.7
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.3e-34 147.1 115 61.7
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.3e-34 147.1 106 64.2
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.3e-34 147.1 106 64.2
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 115 61.7
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.8e-33 146.0 117 62.4
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.4e-33 145.6 105 65.7
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.1e-33 145.2 107 66.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 3.1e-33 145.2 98 68.4
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.1e-33 145.2 104 64.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 4.1e-33 144.8 113 62.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 5.4e-33 144.4 102 70.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 5.4e-33 144.4 97 73.2
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.4e-33 144.4 112 63.4
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 7.0e-33 144.1 95 71.6
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 9.2e-33 143.7 105 63.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 9.2e-33 143.7 105 63.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 9.2e-33 143.7 105 63.8
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 9.2e-33 143.7 105 63.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-32 143.3 105 64.8
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.2e-32 143.3 105 64.8
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.6e-32 142.9 96 67.7
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 2.7e-32 142.1 108 63.0
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.7e-32 142.1 115 60.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.7e-32 142.1 117 59.8
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.7e-32 142.1 106 64.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.5e-32 141.4 96 69.8
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.5e-32 141.4 96 69.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 4.5e-32 141.4 106 64.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 4.5e-32 141.4 100 67.0
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 7.8e-32 140.6 105 62.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 7.8e-32 140.6 96 68.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 7.8e-32 140.6 96 68.8
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.0e-31 140.2 106 63.2
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.3e-31 139.0 96 68.8
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 2.9e-31 138.7 105 61.9
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 2.9e-31 138.7 105 61.9
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 6.6e-31 137.5 88 68.2
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 2.8e-29 132.1 76 73.7
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.7e-29 131.3 115 54.8
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.4e-28 129.8 106 59.4
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-28 129.4 112 58.9
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.3e-28 129.0 97 62.9
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.5e-27 126.3 106 58.5
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.4e-25 119.0 82 65.9
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-22 109.4 55 85.5
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 2.1e-21 105.9 74 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.0e-21 104.0 82 58.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.3e-20 102.4 95 51.6
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 6.8e-20 100.9 63 71.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.5e-19 99.8 60 80.0
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.9e-18 95.5 102 47.1
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.7e-18 95.1 94 54.3
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.4e-17 92.4 60 68.3
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 5.1e-15 84.7 71 53.5
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-12 77.0 70 50.0
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 3.1e-12 75.5 82 47.6
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 6.8e-12 74.3 68 55.9
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.6e-08 61.6 49 63.3
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 3.9e-07 58.5 56 48.2


User provided reference genes

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