Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.8e-126 454.9 237 100.0
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.6e-119 430.6 239 94.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.7e-92 342.4 256 72.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 6.1e-92 341.3 256 72.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.8e-91 339.7 256 72.3
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.3e-83 312.8 253 69.6
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.0e-75 287.3 258 64.0
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 5.7e-74 281.6 247 66.8
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.2e-73 279.6 254 64.6
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.4e-64 249.6 252 61.5
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 8.0e-60 234.6 281 54.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.3e-59 233.0 251 57.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.4e-56 221.9 265 53.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.5e-55 218.8 259 55.2
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-54 217.6 268 54.5
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.3e-54 217.2 265 52.5
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.0e-51 206.1 259 52.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.2e-50 204.1 265 51.7
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.5e-50 201.4 265 50.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.7e-49 200.3 174 64.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.2e-48 196.1 260 51.2
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 5.4e-48 195.3 255 51.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.4e-48 195.3 263 50.6
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 5.4e-48 195.3 255 52.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 7.0e-48 194.9 254 50.4
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.2e-47 194.1 291 47.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.6e-47 193.7 267 49.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.0e-47 193.4 262 48.5
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.5e-47 192.6 265 51.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.3e-46 190.7 269 48.7
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.7e-46 190.3 266 47.7
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.7e-46 190.3 253 49.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 2.3e-46 189.9 262 50.4
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.9e-46 189.1 262 48.9
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 3.9e-46 189.1 253 48.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 8.6e-46 188.0 262 51.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 7.3e-45 184.9 259 48.6
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 7.3e-45 184.9 264 49.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.6e-44 183.7 258 48.4
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-44 183.3 262 47.3
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.8e-44 183.0 263 49.4
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.7e-44 182.2 235 54.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 6.1e-44 181.8 304 44.7
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.0e-44 181.4 231 56.3
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.0e-43 181.0 253 48.2
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.8e-43 180.3 275 47.3
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 6.8e-43 178.3 266 48.5
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-42 177.2 186 57.5
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 3.4e-42 176.0 311 43.4
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 4.4e-42 175.6 262 48.9
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.8e-42 175.3 262 48.5
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 7.5e-42 174.9 258 47.7
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 9.8e-42 174.5 254 48.4
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-41 174.1 267 45.7
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.7e-41 173.7 261 47.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.2e-41 173.3 262 48.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.7e-41 172.6 257 47.1
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.9e-41 172.2 261 46.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.9e-41 172.2 189 56.6
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 4.9e-41 172.2 253 47.8
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 6.4e-41 171.8 264 47.0
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 8.3e-41 171.4 269 44.2
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.9e-40 170.2 263 43.3
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.4e-40 169.9 253 47.0
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.2e-40 169.5 189 55.6
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 5.4e-40 168.7 247 50.6
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.2e-39 167.5 272 45.2
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.2e-39 167.5 258 44.6
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.7e-39 166.4 256 45.3
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 7.8e-39 164.9 282 44.0
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.0e-38 164.5 246 47.6
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.9e-38 162.5 262 44.3
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 5.0e-38 162.2 272 43.0
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.6e-36 157.1 241 47.3
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.8e-36 156.4 265 44.5
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.8e-36 156.4 197 50.8
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 3.6e-36 156.0 257 45.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 4.7e-36 155.6 241 44.8
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 8.0e-36 154.8 237 46.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.4e-35 154.1 267 44.6
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.4e-35 154.1 267 44.6
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.8e-35 153.7 272 41.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.3e-35 153.3 267 44.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.3e-35 153.3 267 44.2
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 4.0e-35 152.5 260 43.8
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 44.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 44.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 5.2e-35 152.1 262 43.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-35 151.4 258 45.0
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-35 151.4 258 45.0
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-34 150.6 259 43.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-34 150.6 259 43.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.0e-34 150.2 186 51.6
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.6e-34 149.8 245 44.9
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.4e-34 149.4 257 42.0
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.4e-34 149.4 263 44.9
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 4.4e-34 149.1 245 44.5
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 5.8e-34 148.7 260 43.5
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 7.5e-34 148.3 265 43.4
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.3e-33 147.5 255 45.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.3e-33 147.5 241 43.6
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.3e-33 147.5 190 53.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.3e-33 147.5 260 43.1
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.7e-33 147.1 254 44.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.2e-33 146.7 259 43.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 6.4e-33 145.2 259 41.3
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.4e-33 145.2 263 43.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.3e-33 144.8 256 42.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.1e-32 144.4 249 43.4
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-32 144.1 241 45.6
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-32 144.1 241 45.6
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.2e-32 142.9 265 41.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.2e-32 142.9 230 45.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.2e-32 142.9 274 43.1
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.1e-32 142.5 158 56.3
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 4.1e-32 142.5 242 46.3
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 7.1e-32 141.7 186 48.4
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.6e-31 140.6 206 48.5
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.1e-31 140.2 249 43.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-31 139.4 239 45.2
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.5e-31 139.4 239 45.2
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.5e-31 139.4 255 42.4
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-31 139.0 254 43.7
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.0e-31 138.7 257 42.0
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.0e-30 137.9 255 42.4
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.3e-30 137.5 251 43.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-30 137.5 259 41.3
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.3e-30 136.7 245 44.9
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.3e-30 136.7 241 44.0
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 5.1e-30 135.6 242 43.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 6.6e-30 135.2 257 42.8
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.6e-30 135.2 263 42.6
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 3.3e-29 132.9 187 49.7
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 4.3e-29 132.5 263 37.6
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.2e-28 131.0 246 44.3
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.1e-28 130.2 262 36.6
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-27 127.5 258 40.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-27 127.1 262 42.0
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.4e-26 122.5 283 36.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 7.6e-26 121.7 228 43.4
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.6e-26 121.7 268 38.4
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 9.9e-26 121.3 284 35.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.7e-25 120.6 169 47.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.9e-25 119.8 176 44.9
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.7e-23 113.2 121 57.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.5e-23 112.8 254 35.0
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 3.5e-23 112.8 206 40.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.0e-22 111.3 188 42.6
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 3.9e-22 109.4 190 44.2
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 6.6e-22 108.6 205 42.0
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.5e-21 107.5 132 49.2
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 3.3e-21 106.3 187 42.8
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-21 106.3 245 35.5
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 5.6e-21 105.5 346 30.3
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.2e-20 104.4 240 37.1
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.1e-20 101.7 245 33.1
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-19 100.9 192 40.1
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.5e-18 97.4 158 41.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.6e-18 96.7 249 32.1
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.8e-18 95.5 239 33.9
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.7e-17 94.0 247 37.2
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 6.4e-17 92.0 171 40.4
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-16 90.9 171 40.4
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-16 88.6 187 38.0
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-14 84.3 243 37.4
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 3.9e-14 82.8 120 43.3
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.7e-14 81.6 182 36.8
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.9e-13 80.5 144 42.4
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.6e-12 77.4 240 30.8
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.8e-12 75.9 186 34.9
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.4e-11 74.3 76 55.3
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.0e-11 72.8 166 34.3
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.0e-11 71.6 71 57.7
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 3.2e-08 63.2 49 61.2
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 3.2e-08 63.2 176 33.5
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 4.2e-08 62.8 186 34.4
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 7.1e-08 62.0 188 33.5
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.6e-07 60.8 95 41.1
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.6e-07 60.8 154 33.8
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.1e-07 60.5 102 42.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 2.7e-07 60.1 162 31.5
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 2.3e-06 57.0 77 41.6
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 3.0e-06 56.6 180 31.7
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 3.9e-06 56.2 129 34.9
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 3.9e-06 56.2 173 32.9


User provided reference genes

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