Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004055g0030 Nicotiana tabacum HOM05D000830 ORTHO05D285210 5.0e-38 160.6 81 100.0
Nitab4.5_0008782g0080 Nicotiana tabacum HOM05D000830 ORTHO05D006613 5.6e-29 130.6 80 82.5
PGSC0003DMG400003067 Solanum tuberosum HOM05D000830 ORTHO05D006613 2.8e-28 128.3 80 80.0
Solyc02g071160.4 Solanum lycopersicum HOM05D000830 ORTHO05D006613 8.0e-28 126.7 80 78.8
Sopen02g020240 Solanum pennellii HOM05D000830 ORTHO05D006613 8.0e-28 126.7 80 78.8
Nitab4.5_0001533g0020 Nicotiana tabacum HOM05D000830 ORTHO05D006613 2.3e-27 125.2 80 81.2
CAN.G257.35 Capsicum annuum HOM05D000830 ORTHO05D006613 1.5e-26 122.5 80 77.5
Peaxi162Scf00482g00411 Petunia axillaris HOM05D000830 ORTHO05D006613 7.0e-24 113.6 82 75.6
DCAR_003949 Daucus carota HOM05D000830 ORTHO05D006613 3.9e-22 107.8 80 72.5
CSS0016110 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D006613 2.8e-20 101.7 80 66.2
Dinv30700 Davidia involucrata HOM05D000830 ORTHO05D006613 3.6e-20 101.3 82 68.3
SGA_v2.0_scaffold1G00138 Striga asiatica HOM05D000830 ORTHO05D006613 3.6e-20 101.3 83 62.7
Cc09_g09670 Coffea canephora HOM05D000830 ORTHO05D006613 1.1e-19 99.8 81 67.9
MELO3C002713.2 Cucumis melo HOM05D000830 ORTHO05D006613 1.1e-19 99.8 81 69.1
CsaV3_1G032690 Cucumis sativus L. HOM05D000830 ORTHO05D006613 1.1e-19 99.8 81 69.1
Dinv32292 Davidia involucrata HOM05D000830 ORTHO05D006613 1.4e-19 99.4 80 67.5
CSS0033933 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D006613 1.8e-19 99.0 80 66.2
Nn3g20868 Nelumbo nucifera HOM05D000830 ORTHO05D006613 1.8e-19 99.0 80 63.8
ClCG03G007110 Citrullus lanatus HOM05D000830 ORTHO05D006613 3.1e-19 98.2 81 67.9
Oeu021513.1 Olea europaea HOM05D000830 ORTHO05D006613 4.0e-19 97.8 80 63.8
SalBow8G3589 Salvia bowleyana HOM05D000830 ORTHO05D006613 6.8e-19 97.1 80 63.8
Sed0009237 Sechium edule HOM05D000830 ORTHO05D006613 1.5e-18 95.9 81 66.7
Eucgr.E02364 Eucalyptus grandis HOM05D000830 ORTHO05D006613 2.6e-18 95.1 81 60.5
Prupe.4G075100 Prunus persica HOM05D000830 ORTHO05D006613 3.4e-18 94.7 81 65.4
Sed0008052 Sechium edule HOM05D000830 ORTHO05D006613 4.4e-18 94.4 81 65.4
MD05G1290600 Malus domestica HOM05D000830 ORTHO05D006613 7.5e-18 93.6 81 64.2
MD16G1203100 Malus domestica HOM05D000830 ORTHO05D006613 3.7e-17 91.3 81 64.2
Potri.001G352700 Populus trichocarpa HOM05D000830 ORTHO05D006613 3.7e-17 91.3 82 63.4
TAR626G0968 Trochodendron aralioides HOM05D000830 ORTHO05D006613 3.7e-17 91.3 81 63.0
MSTRG.16207 Avicennia marina HOM05D000830 ORTHO05D006613 4.9e-17 90.9 80 60.0
Haze_05529 Corylus avellana HOM05D000830 ORTHO05D006613 4.9e-17 90.9 82 61.0
CiPaw.10G094200 Carya illinoinensis HOM05D000830 ORTHO05D006613 6.4e-17 90.5 82 61.0
CiPaw.10G094300 Carya illinoinensis HOM05D000830 ORTHO05D006613 6.4e-17 90.5 82 62.2
Nn4g26480 Nelumbo nucifera HOM05D000830 ORTHO05D006613 8.3e-17 90.1 80 60.0
TAR624G1284 Trochodendron aralioides HOM05D000830 ORTHO05D006613 8.3e-17 90.1 80 61.2
Sc05g0006700 Simmondsia chinensis HOM05D000830 ORTHO05D006613 1.1e-16 89.7 85 62.4
unitig_26.g10093 Utricularia gibba HOM05D000830 ORTHO05D006613 1.4e-16 89.4 80 57.5
FAN16G0222 Fragaria x ananassa HOM05D000830 ORTHO05D006613 2.4e-16 88.6 80 63.8
Thecc.06G156300 Theobroma cacao HOM05D000830 ORTHO05D006613 7.0e-16 87.0 81 63.0
RcHm_v2.0_Chr5g0013071 Rosa chinensis HOM05D000830 ORTHO05D006613 9.2e-16 86.7 83 60.2
Sabra16G0232000 Salix brachista HOM05D000830 ORTHO05D006613 9.2e-16 86.7 82 61.0
ECA236G3881 Erigeron canadensis HOM05D000830 ORTHO05D006613 1.2e-15 86.3 84 60.7
Potri.011G079000 Populus trichocarpa HOM05D000830 ORTHO05D006613 1.6e-15 85.9 83 59.0
Lsat_1_v5_gn_7_35561 Lactuca sativa HOM05D000830 ORTHO05D006613 4.6e-15 84.3 84 59.5
Ciclev10015651m.g Citrus clementina HOM05D000830 ORTHO05D006613 6.0e-15 84.0 83 57.8
Duzib101G0005 Durio zibethinus HOM05D000830 ORTHO05D006613 6.0e-15 84.0 81 59.3
Aqoxy4G00126 Aquilegia oxysepala HOM05D000830 ORTHO05D006613 7.8e-15 83.6 83 56.6
Duzib235G0089 Durio zibethinus HOM05D000830 ORTHO05D006613 7.8e-15 83.6 81 58.0
arahy.Tifrunner.gnm1.ann1.E1PPRT Arachis hypogaea HOM05D000830 ORTHO05D006613 1.0e-14 83.2 82 62.2
Manes.15G117800 Manihot esculenta HOM05D000830 ORTHO05D006613 1.0e-14 83.2 82 62.2
Lalb_Chr07g0188961 Lupinus albus HOM05D000830 ORTHO05D006613 1.3e-14 82.8 82 58.5
Migut.M00949 Erythranthe guttata HOM05D000830 ORTHO05D006613 1.7e-14 82.4 83 55.4
Cpa.g.sc17.102 Carica papaya HOM05D000830 ORTHO05D006613 2.3e-14 82.0 89 59.6
COL.COLO4_07490 Corchorus olitorius HOM05D000830 ORTHO05D006613 3.9e-14 81.3 83 55.4
Duzib160G0374 Durio zibethinus HOM05D000830 ORTHO05D006613 3.9e-14 81.3 81 58.0
Atru.chr10.1369 Acer truncatum HOM05D000830 ORTHO05D006613 6.6e-14 80.5 84 59.5
Lj4g0015318 Lotus japonicus HOM05D000830 ORTHO05D006613 6.6e-14 80.5 84 58.3
PSO339G4299 Papaver somniferum HOM05D000830 ORTHO05D006613 6.6e-14 80.5 80 56.2
PSO384G1370 Papaver somniferum HOM05D000830 ORTHO05D006613 6.6e-14 80.5 80 56.2
Hund21492 Selenicereus undatus HOM05D000830 ORTHO05D006613 8.6e-14 80.1 84 58.3
CiPaw.09G128100 Carya illinoinensis HOM05D000830 ORTHO05D006613 1.5e-13 79.3 83 57.8
Medtr4g094572 Medicago truncatula HOM05D000830 ORTHO05D006613 1.5e-13 79.3 82 63.4
FvH4_3g06240 Fragaria vesca HOM05D000830 ORTHO05D006613 3.3e-13 78.2 80 58.8
FAN11G0698 Fragaria x ananassa HOM05D000830 ORTHO05D006613 3.3e-13 78.2 80 58.8
Ca_18288_v3 Cicer arietinum L. HOM05D000830 ORTHO05D006613 4.3e-13 77.8 82 56.1
EL10Ac8g19777 Beta vulgaris HOM05D000830 ORTHO05D006613 5.6e-13 77.4 88 52.3
AUR62035787 Chenopodium quinoa HOM05D000830 ORTHO05D006613 7.3e-13 77.0 85 51.8
AUR62027572 Chenopodium quinoa HOM05D000830 ORTHO05D006613 9.5e-13 76.6 85 52.9
Gohir.A10G038200 Gossypium hirsutum HOM05D000830 ORTHO05D006613 1.2e-12 76.3 81 55.6
CANSAT35G0812 Cannabis sativa HOM05D000830 ORTHO05D006613 1.6e-12 75.9 87 52.9
Manes.17G065800 Manihot esculenta HOM05D000830 ORTHO05D006613 2.8e-12 75.1 82 57.3
Aa31LG6G5830 Aethionema arabicum HOM05D000830 ORTHO05D006613 4.7e-12 74.3 92 52.2
FAN25G3405 Fragaria x ananassa HOM05D000830 ORTHO05D006613 4.7e-12 74.3 80 55.0
Gorai.011G041200 Gossypium raimondii HOM05D000830 ORTHO05D006613 4.7e-12 74.3 81 55.6
Glyma.08G081900 Glycine max HOM05D000830 ORTHO05D006613 6.2e-12 73.9 82 57.3
HanXRQChr06g0183391 Helianthus annuus HOM05D000830 ORTHO05D006613 6.2e-12 73.9 86 52.3
Psat7g092560 Pisum sativum HOM05D000830 ORTHO05D006613 6.2e-12 73.9 83 57.8
Glyma.05G127200 Glycine max HOM05D000830 ORTHO05D006613 8.1e-12 73.6 82 57.3
Gohir.D10G039200 Gossypium hirsutum HOM05D000830 ORTHO05D006613 1.4e-11 72.8 81 54.3
VMungo0251G1790 Vigna mungo HOM05D000830 ORTHO05D006613 1.4e-11 72.8 82 57.3
QL05p060096 Quercus lobata HOM05D000830 ORTHO05D006613 1.8e-11 72.4 83 57.8
THA.LOC104812658 Tarenaya hassleriana HOM05D000830 ORTHO05D006613 1.8e-11 72.4 89 55.1
FAN21G3262 Fragaria x ananassa HOM05D000830 ORTHO05D006613 6.8e-11 70.5 80 52.5
THA.LOC104820635 Tarenaya hassleriana HOM05D000830 ORTHO05D006613 6.8e-11 70.5 98 51.0
BcaC05g26994 Brassica carinata HOM05D000830 ORTHO05D006613 8.9e-11 70.1 88 48.9
C05p28540 Brassica napus HOM05D000830 ORTHO05D006613 8.9e-11 70.1 88 48.9
BolC5t31578H Brassica oleracea HOM05D000830 ORTHO05D006613 8.9e-11 70.1 88 48.9
Sp1g25690 Schrenkiella parvula HOM05D000830 ORTHO05D006613 8.9e-11 70.1 92 50.0
Phvul.002G197700 Phaseolus vulgaris HOM05D000830 ORTHO05D006613 1.2e-10 69.7 82 57.3
A09p36670 Brassica napus HOM05D000830 ORTHO05D006613 2.6e-10 68.6 88 47.7
BraA09t39186Z Brassica rapa HOM05D000830 ORTHO05D006613 2.6e-10 68.6 88 47.7
Carub.0001s2804 Capsella rubella HOM05D000830 ORTHO05D006613 3.4e-10 68.2 91 46.2
TWI73G0307 Tripterygium wilfordii HOM05D000830 ORTHO05D006613 3.4e-10 68.2 84 51.2
Ah.09g232900 Amaranthus hybridus HOM05D000830 ORTHO05D006613 4.4e-10 67.8 85 49.4
A08p24830 Brassica napus HOM05D000830 ORTHO05D006613 4.4e-10 67.8 88 47.7
BraA08t34438Z Brassica rapa HOM05D000830 ORTHO05D006613 4.4e-10 67.8 88 47.7
Hund17839 Selenicereus undatus HOM05D000830 ORTHO05D006613 4.4e-10 67.8 84 52.4
Ah.14g086640 Amaranthus hybridus HOM05D000830 ORTHO05D006613 5.8e-10 67.4 84 50.0
Thhalv10010017m.g Eutrema salsugineum HOM05D000830 ORTHO05D006613 5.8e-10 67.4 92 46.7
BcaB03g12180 Brassica carinata HOM05D000830 ORTHO05D006613 7.5e-10 67.0 92 47.8
SHI35743 Sapria himalayana HOM05D000830 ORTHO05D006613 9.9e-10 66.6 81 53.1
HPP92_001520 Vanilla planifolia HOM05D000830 ORTHO05D006613 1.3e-09 66.2 83 50.6
BcaB07g32566 Brassica carinata HOM05D000830 ORTHO05D006613 1.7e-09 65.9 87 49.4
AL1G43630 Arabidopsis lyrata HOM05D000830 ORTHO05D006613 2.9e-09 65.1 93 44.1
BolC3t19878H Brassica oleracea HOM05D000830 ORTHO05D006613 2.9e-09 65.1 89 48.3
CDE07G0855 Ceratophyllum demersum HOM05D000830 ORTHO05D006613 3.7e-09 64.7 80 48.8
CDE04G3110 Ceratophyllum demersum HOM05D000830 ORTHO05D006613 4.9e-09 64.3 80 47.5
C03p76220 Brassica napus HOM05D000830 ORTHO05D006613 6.4e-09 63.9 90 48.9
Gohir.D06G141132 Gossypium hirsutum HOM05D000830 ORTHO05D006613 1.4e-08 62.8 83 47.0
AT1G29790 Arabidopsis thaliana HOM05D000830 ORTHO05D006613 5.4e-08 60.8 93 43.0
CARHR029170 Cardamine hirsuta HOM05D000830 ORTHO05D006613 5.4e-08 60.8 94 43.6
Gorai.010G164500 Gossypium raimondii HOM05D000830 ORTHO05D006613 5.4e-08 60.8 83 45.8
Gohir.A06G135800 Gossypium hirsutum HOM05D000830 ORTHO05D006613 7.8e-07 57.0 83 44.6


User provided reference genes

Program Settings