Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 0.0e+00 1135.2 580 100.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.1e-299 1031.2 579 91.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.5e-298 1028.9 580 92.8
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.4e-296 1022.3 582 90.9
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.5e-296 1021.5 582 90.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.2e-296 1021.1 581 90.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 4.0e-270 934.5 577 82.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 6.8e-270 933.7 564 83.9
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 7.5e-269 930.2 571 83.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 8.3e-268 926.8 580 83.8
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 7.0e-267 923.7 574 82.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.0e-266 922.2 570 82.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.5e-264 916.0 584 81.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.5e-264 914.1 567 82.2
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 7.2e-264 913.7 578 82.2
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 9.5e-264 913.3 562 83.5
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.6e-263 911.4 599 79.1
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 4.0e-262 907.9 588 80.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 6.8e-262 907.1 537 85.3
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.8e-262 907.1 574 81.4
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 6.8e-262 907.1 586 80.9
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.0e-261 905.6 575 81.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 4.4e-261 904.4 571 81.6
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 4.4e-261 904.4 573 81.7
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.8e-260 901.7 569 81.7
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.3e-260 900.6 571 81.4
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.3e-260 900.2 566 81.1
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.1e-259 899.8 571 81.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.1e-259 898.3 570 81.8
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.6e-258 896.0 572 80.4
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.6e-258 896.0 572 80.9
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.0e-258 895.6 579 79.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 7.8e-258 893.6 575 80.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.0e-257 893.3 537 84.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.3e-257 892.9 557 81.5
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.7e-257 892.5 528 85.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 6.6e-257 890.6 573 80.3
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.6e-257 890.2 564 81.6
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.1e-256 889.8 578 79.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 2.5e-256 888.6 577 79.9
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.3e-256 887.9 524 85.5
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 5.6e-256 887.5 566 80.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.6e-255 885.9 542 82.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.8e-255 885.2 574 79.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 4.7e-255 884.4 523 84.7
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 4.7e-255 884.4 552 81.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 8.0e-255 883.6 565 80.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 8.0e-255 883.6 583 78.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.0e-254 881.7 576 78.3
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-254 881.7 577 79.7
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 4.0e-254 881.3 523 84.5
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.2e-254 880.9 532 82.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 5.2e-254 880.9 535 82.8
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.5e-253 879.4 572 79.9
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 5.8e-253 877.5 604 76.8
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 5.8e-253 877.5 565 80.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 7.5e-253 877.1 566 80.2
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 7.5e-253 877.1 566 80.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 9.8e-253 876.7 566 80.2
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 9.8e-253 876.7 566 80.2
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 9.8e-253 876.7 566 80.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.3e-252 876.3 575 79.5
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-252 876.3 565 79.1
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.3e-252 876.3 580 78.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.7e-252 875.9 564 79.3
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-252 875.5 566 79.9
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-252 874.8 544 82.4
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.4e-252 874.0 566 79.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 8.3e-252 873.6 568 79.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 8.3e-252 873.6 568 79.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.1e-251 873.2 526 84.0
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.1e-251 873.2 585 77.1
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.2e-251 871.7 566 78.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 4.1e-251 871.3 566 80.0
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.7e-250 868.6 585 77.3
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.5e-250 868.2 567 79.5
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.6e-250 867.8 585 77.8
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.0e-250 867.5 579 78.1
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.0e-249 865.1 571 77.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.9e-249 864.8 566 78.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-248 863.2 569 78.0
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.9e-248 862.4 569 77.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.5e-248 862.1 563 79.0
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.8e-247 858.6 524 82.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-247 858.2 579 76.9
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.1e-246 855.1 579 76.7
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.2e-245 853.2 544 79.4
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-245 852.0 579 76.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 7.5e-245 850.5 595 75.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 9.8e-245 850.1 547 79.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-244 849.4 547 79.7
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-243 846.7 584 79.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.2e-243 843.6 564 77.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.6e-241 837.4 578 75.6
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.3e-238 828.9 568 75.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.1e-238 828.6 495 84.4
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.0e-238 828.2 575 75.5
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.2e-238 827.8 557 76.5
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.2e-237 826.6 531 79.8
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.4e-235 817.8 570 76.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.2e-234 816.6 584 73.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.5e-234 815.1 478 86.4
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.5e-232 808.9 474 85.9
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 9.2e-227 790.4 575 73.6
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.1e-224 783.5 489 82.4
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.9e-224 782.7 565 70.8
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 7.8e-218 760.8 497 75.7
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.6e-216 754.6 524 74.0
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 2.1e-215 752.7 496 74.4
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 6.4e-212 741.1 551 67.9
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.1e-208 730.3 548 71.9
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.5e-208 729.9 453 80.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 9.9e-205 717.2 457 79.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 6.4e-204 714.5 410 88.0
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 5.1e-201 704.9 543 67.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 8.7e-201 704.1 552 68.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.2e-194 683.7 577 65.0
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.1e-190 670.6 554 62.3
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 3.4e-189 665.6 552 67.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.5e-184 650.2 465 71.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.1e-182 644.0 553 58.8
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.1e-182 644.0 517 64.6
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.6e-165 587.0 323 90.1
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-161 573.5 510 61.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.0e-160 570.1 558 59.3
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 8.3e-159 564.7 346 84.7
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-158 564.3 537 57.4
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.5e-157 558.9 417 66.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.4e-152 542.3 499 58.3
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.2e-151 540.0 501 58.3
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-151 539.3 501 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 4.0e-137 492.7 336 72.0
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.9e-127 459.9 498 52.0
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.4e-126 455.7 505 48.1
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.1e-118 429.5 607 47.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.6e-104 383.6 536 40.5
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-95 354.8 434 48.8
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 5.5e-86 322.8 450 40.0
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.9e-85 318.9 351 53.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.1e-70 271.9 185 71.9
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.7e-69 267.3 161 86.3
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.4e-65 254.2 569 36.7
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.0e-60 237.3 256 52.3
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.2e-53 215.3 418 38.3
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.7e-47 194.9 136 72.8
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-44 184.1 105 83.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.0e-44 183.7 516 32.6
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 7.0e-41 172.9 106 85.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 2.0e-40 171.4 118 80.5
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.5e-32 144.1 139 54.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-31 142.5 79 86.1
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.6e-30 136.7 124 66.1
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 2.3e-28 131.3 77 87.0
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 4.3e-22 110.5 65 86.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 3.6e-21 107.5 76 69.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.4e-20 105.5 90 51.1
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-16 92.0 54 85.2
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.7e-16 91.3 71 70.4
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 2.7e-16 91.3 60 78.3
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.5e-14 84.7 50 86.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 2.8e-13 81.3 53 75.5
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.9e-12 76.3 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.2e-10 71.6 98 48.0
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.7e-10 70.9 43 79.1
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.1e-09 66.6 52 63.5
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 3.5e-08 64.3 139 39.6
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.0e-07 62.8 50 62.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.9e-06 58.5 94 41.5
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.9e-06 58.5 44 59.1


User provided reference genes

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