Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-119 433.0 217 100.0
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.2e-17 94.4 61 72.1
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.0e-17 93.6 53 79.2
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 5.9e-17 92.0 53 77.4
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 5.9e-17 92.0 53 77.4
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 5.9e-17 92.0 53 77.4
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 7.7e-17 91.7 53 77.4
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.7e-17 91.7 53 83.0
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.5e-16 88.2 53 77.4
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.5e-15 86.7 53 71.7
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.6e-14 82.8 50 74.0
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.0e-13 81.3 54 68.5
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.0e-13 79.7 54 66.7
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 5.1e-13 79.0 54 64.8
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 5.1e-13 79.0 54 64.8
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 6.7e-13 78.6 54 64.8
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 8.8e-13 78.2 54 66.7
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 8.8e-13 78.2 54 68.5
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 1.1e-12 77.8 52 65.4
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.5e-12 77.4 54 64.8
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.0e-12 77.0 56 64.3
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.6e-12 76.6 54 64.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.6e-12 76.6 55 61.8
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.6e-12 76.6 65 52.3
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 3.3e-12 76.3 54 63.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 4.4e-12 75.9 53 64.2
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 7.4e-12 75.1 56 62.5
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 7.4e-12 75.1 56 62.5
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 7.4e-12 75.1 54 61.1
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.7e-12 74.7 62 56.5
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 9.7e-12 74.7 54 64.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.3e-11 74.3 54 63.0
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-11 74.3 54 61.1
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.7e-11 73.9 65 52.3
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.2e-11 73.6 52 65.4
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-11 73.6 52 65.4
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.2e-11 73.6 53 60.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.2e-11 73.6 54 59.3
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.8e-11 73.2 65 52.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.8e-11 73.2 54 63.0
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.8e-11 73.2 61 57.4
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.8e-11 73.2 54 59.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.8e-11 73.2 54 59.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.8e-11 73.2 54 59.3
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 2.8e-11 73.2 54 59.3
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.7e-11 72.8 54 59.3
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.8e-11 72.4 54 59.3
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 6.3e-11 72.0 54 61.1
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.3e-11 72.0 55 60.0
Nitab4.5_0003439g0030 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.3e-11 72.0 85 50.6
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 6.3e-11 72.0 65 52.3
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.3e-11 72.0 54 59.3
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.3e-11 72.0 54 61.1
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.3e-11 72.0 54 61.1
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 8.2e-11 71.6 54 61.1
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 8.2e-11 71.6 52 63.5
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 8.2e-11 71.6 52 63.5
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 8.2e-11 71.6 52 63.5
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.2e-11 71.6 55 60.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 8.2e-11 71.6 52 63.5
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-10 71.2 62 54.8
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 62.3
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.1e-10 71.2 54 57.4
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.1e-10 71.2 53 58.5
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.4e-10 70.9 51 62.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.8e-10 70.5 53 60.4
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.8e-10 70.5 54 55.6
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-10 70.1 52 61.5
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.4e-10 70.1 52 61.5
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.4e-10 70.1 54 59.3
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.1e-10 69.7 53 60.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 3.1e-10 69.7 55 56.4
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 4.1e-10 69.3 54 57.4
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 4.1e-10 69.3 62 53.2
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 4.1e-10 69.3 54 57.4
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.1e-10 69.3 53 58.5
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 5.3e-10 68.9 49 63.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 5.3e-10 68.9 55 54.5
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 5.3e-10 68.9 54 55.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 5.3e-10 68.9 54 57.4
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 5.3e-10 68.9 54 55.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 6.9e-10 68.6 52 61.5
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 6.9e-10 68.6 54 57.4
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.1e-10 68.2 53 56.6
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.2e-09 67.8 53 58.5
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.2e-09 67.8 49 59.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.5e-09 67.4 47 63.8
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.5e-09 67.4 48 62.5
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 2.0e-09 67.0 54 63.0
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.6e-09 66.6 53 54.7
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-09 65.9 49 59.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-09 65.9 49 59.2
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.3e-08 64.3 45 66.7
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.3e-08 64.3 55 58.2
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.7e-08 63.9 49 57.1
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 3.8e-08 62.8 52 53.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 3.8e-08 62.8 50 54.0
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.0e-08 62.4 56 53.6
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 6.5e-08 62.0 43 62.8
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 6.5e-08 62.0 50 56.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 6.5e-08 62.0 50 54.0
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.5e-08 61.6 48 56.2
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.5e-08 61.6 48 56.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 8.5e-08 61.6 53 56.6
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.4e-07 60.8 56 53.6
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.9e-07 60.5 48 56.2
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.5e-07 60.1 64 43.8
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 9.4e-07 58.2 43 58.1
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.6e-06 57.4 37 70.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 2.1e-06 57.0 49 51.0


User provided reference genes

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