Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 9.4e-240 833.2 437 100.0
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.5e-192 676.4 434 81.3
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.6e-162 575.1 414 75.1
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.4e-157 558.9 431 71.5
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.6e-154 550.1 369 77.2
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.9e-152 543.1 369 75.9
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.3e-151 540.4 459 64.9
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.1e-151 539.7 462 64.7
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 6.4e-148 528.1 415 69.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 4.8e-135 485.3 452 57.7
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.4e-134 483.8 369 66.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.4e-131 473.8 429 58.5
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.5e-131 473.0 362 66.6
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.2e-131 472.6 376 64.9
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.2e-131 472.6 446 57.0
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.2e-130 470.7 371 64.4
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.7e-130 469.5 372 65.1
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.7e-130 469.5 429 57.8
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-129 467.6 451 57.4
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.1e-129 465.3 453 56.1
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.7e-129 464.9 448 56.9
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 8.8e-129 464.5 429 56.4
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 2.0e-128 463.4 431 55.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.5e-128 463.0 441 56.5
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.5e-128 463.0 434 58.8
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 4.3e-128 462.2 448 55.8
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-128 462.2 450 55.8
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 9.7e-128 461.1 432 56.0
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.7e-127 460.3 452 55.1
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.7e-127 459.1 438 56.8
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.7e-127 459.1 448 56.5
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.1e-126 457.6 448 55.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.4e-126 456.4 436 56.2
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 9.1e-126 454.5 415 56.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 1.2e-125 454.1 429 56.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.5e-125 453.8 442 55.4
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.5e-125 453.8 442 55.0
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.0e-125 453.4 436 55.7
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.6e-125 453.0 445 55.3
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 3.4e-125 452.6 436 56.0
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.3e-124 450.7 454 54.0
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.2e-124 449.9 454 53.7
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.2e-124 449.9 451 56.5
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.9e-124 449.5 405 59.0
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 6.5e-124 448.4 454 53.1
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 8.5e-124 448.0 468 52.4
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 9.4e-123 444.5 442 54.1
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.2e-122 444.1 448 54.9
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 1.6e-122 443.7 424 58.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.6e-122 443.7 455 53.0
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 2.1e-122 443.4 368 60.1
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 2.7e-122 443.0 468 52.4
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.7e-122 443.0 370 61.1
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.7e-122 443.0 448 53.8
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 2.7e-122 443.0 424 56.6
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.4e-121 440.7 447 52.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 2.3e-121 439.9 379 59.4
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.3e-121 439.9 444 54.3
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 3.0e-121 439.5 443 54.0
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.0e-121 439.5 453 54.1
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 6.7e-121 438.3 451 53.0
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.6e-120 436.4 449 53.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.7e-120 435.3 452 53.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.4e-120 434.9 453 52.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.4e-120 434.9 454 53.5
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 9.7e-120 434.5 379 60.7
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-118 431.0 457 52.5
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 4.1e-118 429.1 418 56.9
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 5.3e-118 428.7 456 52.2
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 4.5e-117 425.6 449 53.2
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 7.7e-117 424.9 455 50.8
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.0e-116 424.5 452 51.1
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 3.8e-116 422.5 518 46.7
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 5.0e-116 422.2 458 52.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.0e-116 422.2 448 54.0
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 6.5e-116 421.8 458 52.0
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 8.5e-116 421.4 465 50.8
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.6e-114 417.2 456 50.2
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.6e-114 417.2 448 51.1
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.6e-114 417.2 450 52.7
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 1.6e-114 417.2 452 53.3
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 4.7e-114 415.6 468 51.7
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.4e-113 414.1 451 51.7
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.8e-113 413.7 465 51.0
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 3.9e-113 412.5 467 49.3
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 5.2e-113 412.1 410 54.4
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.2e-113 412.1 371 57.1
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 5.2e-113 412.1 370 57.0
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.3e-111 407.5 460 50.2
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 2.2e-111 406.8 447 51.2
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.8e-111 406.4 371 56.3
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.8e-110 403.7 425 51.3
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.3e-110 402.1 444 51.4
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.0e-109 400.2 403 53.1
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.0e-108 397.9 415 52.3
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 3.2e-107 392.9 437 50.1
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.2e-107 392.5 431 50.6
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 4.7e-106 389.0 370 54.1
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 8.8e-105 384.8 394 52.3
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 1.2e-104 384.4 377 53.3
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 4.5e-101 372.5 446 48.9
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.2e-97 359.0 232 80.6
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-95 354.4 428 48.6
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 3.0e-89 333.2 253 64.0
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.6e-61 241.1 367 37.9
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 3.8e-55 219.9 244 50.4
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 3.5e-53 213.4 129 78.3
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 1.5e-51 208.0 169 59.2
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.2e-47 194.1 282 44.0
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 7.1e-46 189.1 139 66.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.5e-43 181.4 160 65.6
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 1.6e-42 177.9 292 39.7
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 3.1e-41 173.7 255 40.8
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.5e-37 160.2 161 59.6
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 7.6e-32 142.5 160 57.5
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.0e-31 142.1 159 56.6
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 1.4e-30 138.3 119 60.5
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 1.3e-28 131.7 101 62.4
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.5e-27 127.5 101 63.4
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 3.1e-25 120.6 142 54.2
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 2.9e-23 114.0 115 50.4
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.4e-23 112.5 80 62.5
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 2.1e-21 107.8 108 52.8
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.5e-21 107.1 78 60.3
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.6e-18 98.2 251 33.1
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.1e-17 95.5 137 48.2
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.4e-14 85.1 136 44.9
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 4.2e-14 83.6 103 46.6
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 4.2e-14 83.6 65 61.5
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.4e-14 82.4 136 43.4
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-13 82.0 103 45.6
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-13 81.6 103 45.6
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.7e-13 80.9 103 44.7
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.6e-13 80.5 103 45.6
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.1e-13 79.7 149 42.3
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 7.9e-13 79.3 207 34.8
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-12 78.2 115 42.6
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 3.9e-12 77.0 156 36.5
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.9e-12 77.0 115 41.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 5.1e-12 76.6 156 36.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.1e-12 76.6 103 44.7
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.8e-12 75.9 145 36.6
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 2.5e-11 74.3 195 32.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.3e-11 73.9 178 32.0
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.3e-11 73.9 190 32.6
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 5.7e-11 73.2 181 32.0
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 7.4e-11 72.8 116 38.8
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 7.4e-11 72.8 84 47.6
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-10 71.6 195 31.8
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.2e-10 71.2 179 30.7
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 3.7e-10 70.5 173 35.3
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 4.8e-10 70.1 194 31.4
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 8.2e-10 69.3 98 41.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.1e-09 68.9 195 32.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.3e-09 66.6 124 38.7
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 6.9e-09 66.2 197 30.5
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 9.1e-09 65.9 161 35.4
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.2e-08 65.5 185 30.8
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.0e-08 64.7 140 33.6
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 3.4e-08 63.9 124 36.3
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.5e-08 63.5 142 32.4
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 5.9e-08 63.2 149 33.6
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 5.9e-08 63.2 92 38.0
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 1.3e-07 62.0 65 50.8
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.3e-07 62.0 203 32.0
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 2.2e-07 61.2 186 27.4
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.9e-07 60.8 220 27.3
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.9e-07 60.8 183 31.7
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 3.8e-07 60.5 112 42.0
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 3.8e-07 60.5 151 35.8
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 6.5e-07 59.7 177 33.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 6.5e-07 59.7 102 37.3
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 1.4e-06 58.5 113 39.8
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 1.9e-06 58.2 112 41.1
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.2e-06 57.4 74 45.9
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.2e-06 57.4 74 45.9
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 4.2e-06 57.0 116 34.5
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 5.5e-06 56.6 107 31.8
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.2e-06 56.2 195 29.2
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 7.2e-06 56.2 94 40.4
BcaC08g46948 Brassica carinata HOM05D003094 ORTHO05D003482 9.4e-06 55.8 57 47.4
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 9.4e-06 55.8 215 30.7


User provided reference genes

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