Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 4.8e-55 217.6 112 100.0
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 3.1e-38 161.8 92 93.5
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 8.2e-31 137.1 93 81.7
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 1.1e-30 136.7 92 78.3
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 1.8e-30 136.0 96 81.2
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 2.4e-30 135.6 96 81.2
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 3.2e-19 98.6 103 55.3
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 8.8e-17 90.5 101 51.5
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 1.5e-16 89.7 101 54.5
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 1.5e-16 89.7 101 50.5
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 2.0e-16 89.4 101 47.5
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 4.4e-16 88.2 100 48.0
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 5.7e-16 87.8 102 51.0
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 9.7e-16 87.0 102 49.0
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 9.7e-16 87.0 102 49.0
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 2.2e-15 85.9 103 49.5
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 6.3e-15 84.3 91 50.5
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.4e-14 83.2 95 53.7
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 1.8e-14 82.8 101 47.5
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 1.8e-14 82.8 103 49.5
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 2.4e-14 82.4 102 49.0
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 2.4e-14 82.4 103 48.5
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 5.3e-14 81.3 102 49.0
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 5.3e-14 81.3 101 45.5
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 7.0e-14 80.9 101 47.5
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 9.1e-14 80.5 102 47.1
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 1.6e-13 79.7 87 50.6
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 1.6e-13 79.7 91 49.5
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 2.0e-13 79.3 87 48.3
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 2.7e-13 79.0 95 50.5
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 3.5e-13 78.6 121 41.3
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 4.5e-13 78.2 100 45.0
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 4.5e-13 78.2 99 49.5
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 4.5e-13 78.2 91 50.5
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 7.7e-13 77.4 100 45.0
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 1.0e-12 77.0 94 44.7
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 1.3e-12 76.6 87 47.1
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 1.3e-12 76.6 100 48.0
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 1.7e-12 76.3 100 46.0
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 1.7e-12 76.3 100 46.0
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 1.7e-12 76.3 102 47.1
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 2.2e-12 75.9 50 74.0
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 5.0e-12 74.7 103 44.7
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 5.0e-12 74.7 103 44.7
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 5.0e-12 74.7 90 45.6
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 6.5e-12 74.3 103 43.7
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 6.5e-12 74.3 101 45.5
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 6.5e-12 74.3 83 51.8
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 8.5e-12 73.9 102 48.0
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 8.5e-12 73.9 88 48.9
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.1e-11 73.6 103 46.6
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 1.1e-11 73.6 90 44.4
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.5e-11 73.2 101 46.5
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 1.9e-11 72.8 88 50.0
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 2.5e-11 72.4 102 47.1
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.5e-11 72.4 101 44.6
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 3.2e-11 72.0 103 44.7
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 3.2e-11 72.0 76 44.7
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 3.2e-11 72.0 92 47.8
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 4.2e-11 71.6 73 49.3
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 4.2e-11 71.6 70 54.3
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 5.5e-11 71.2 88 46.6
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 7.2e-11 70.9 92 48.9
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 7.2e-11 70.9 95 48.4
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 7.2e-11 70.9 91 46.2
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 9.4e-11 70.5 92 44.6
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 9.4e-11 70.5 87 47.1
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 1.6e-10 69.7 91 48.4
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 1.6e-10 69.7 76 50.0
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 2.7e-10 68.9 100 41.0
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 6.1e-10 67.8 88 48.9
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 6.1e-10 67.8 60 55.0
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 6.1e-10 67.8 94 41.5
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 8.0e-10 67.4 87 44.8
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 8.0e-10 67.4 93 39.8
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.0e-09 67.0 56 53.6
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.0e-09 67.0 116 41.4
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.8e-09 66.2 94 48.9
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 1.8e-09 66.2 79 50.6
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.8e-09 66.2 94 48.9
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 2.3e-09 65.9 89 43.8
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 3.0e-09 65.5 47 61.7
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 4.0e-09 65.1 94 41.5
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 4.0e-09 65.1 96 46.9
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 4.0e-09 65.1 92 44.6
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 5.2e-09 64.7 90 45.6
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 6.8e-09 64.3 98 40.8
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 2.6e-08 62.4 100 41.0
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 2.6e-08 62.4 92 40.2
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 5.7e-08 61.2 74 50.0
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 1.7e-07 59.7 50 64.0
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 1.7e-07 59.7 50 64.0
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.7e-07 59.7 92 40.2
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 2.8e-07 58.9 102 44.1
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 4.8e-07 58.2 90 43.3
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 8.3e-07 57.4 100 43.0
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 1.1e-06 57.0 65 47.7
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 1.8e-06 56.2 65 49.2
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 3.1e-06 55.5 66 47.0
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 3.1e-06 55.5 88 36.4
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 7.0e-06 54.3 90 41.1
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 9.1e-06 53.9 50 50.0


User provided reference genes

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