Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 0.0e+00 1077.8 540 100.0
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.2e-302 1040.0 532 97.9
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.6e-281 971.1 532 91.5
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 7.0e-269 930.2 538 86.2
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 3.6e-265 917.9 533 85.7
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.4e-261 906.0 533 85.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 2.0e-255 885.6 535 82.1
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 3.1e-245 851.7 539 79.8
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 7.0e-245 850.5 535 80.6
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 4.5e-244 847.8 533 78.6
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 6.8e-240 833.9 535 78.3
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.3e-235 818.9 537 77.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 7.3e-234 813.9 535 76.4
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 9.5e-234 813.5 535 77.0
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.6e-233 812.8 536 76.9
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.1e-233 812.4 522 77.4
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.7e-233 811.2 535 76.8
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 8.0e-233 810.4 534 75.3
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.8e-232 809.3 526 76.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.8e-232 809.3 517 78.7
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.1e-232 808.5 534 76.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 5.2e-232 807.7 517 77.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 3.2e-229 798.5 535 75.0
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 4.1e-229 798.1 535 75.3
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.4e-229 797.7 535 76.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 7.0e-229 797.3 532 75.8
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 9.2e-229 797.0 548 73.5
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.2e-228 796.6 519 76.5
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 1.6e-228 796.2 548 73.5
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.0e-228 795.8 522 77.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 6.0e-228 794.3 535 74.6
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 6.0e-228 794.3 476 81.9
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 7.8e-228 793.9 519 76.5
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 1.0e-227 793.5 535 74.2
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.0e-227 793.5 535 75.1
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.0e-227 793.5 522 76.1
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.0e-227 792.0 519 76.5
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.9e-227 791.6 519 76.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 3.9e-227 791.6 535 73.6
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 3.9e-227 791.6 535 75.3
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 5.0e-227 791.2 535 74.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.6e-227 790.4 519 76.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 2.5e-226 788.9 535 75.1
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 3.3e-226 788.5 514 75.7
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 3.3e-226 788.5 535 73.6
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.3e-226 788.5 539 74.4
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 5.6e-226 787.7 531 75.0
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 9.5e-226 786.9 531 74.8
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 3.6e-225 785.0 493 79.3
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.1e-224 783.5 535 74.0
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 5.2e-224 781.2 534 74.3
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.0e-223 779.2 487 78.2
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 5.8e-223 777.7 531 74.6
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.7e-222 776.2 613 66.2
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 2.2e-222 775.8 533 72.4
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.9e-222 775.4 487 78.0
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 3.7e-222 775.0 530 74.9
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.7e-222 775.0 531 73.6
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.9e-222 774.6 535 74.0
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 6.4e-222 774.2 536 71.6
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-221 773.5 502 78.3
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 3.2e-221 771.9 534 74.0
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 7.1e-221 770.8 538 73.0
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 7.1e-221 770.8 538 73.2
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 3.5e-220 768.5 540 73.1
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.0e-220 767.7 534 73.4
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.0e-219 766.9 533 73.5
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 5.1e-219 764.6 532 73.1
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 8.6e-219 763.8 538 72.3
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.5e-218 762.3 538 72.3
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 9.5e-218 760.4 539 72.5
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.6e-217 759.6 539 72.4
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 3.6e-217 758.4 514 73.9
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 6.2e-217 757.7 534 72.5
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.8e-216 756.1 527 73.2
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.2e-215 753.4 463 79.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-214 750.0 533 71.1
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.3e-214 750.0 534 71.5
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 6.4e-214 747.7 532 72.0
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.1e-213 746.9 525 71.8
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.4e-213 745.7 529 71.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.6e-212 743.0 536 70.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.1e-212 742.7 537 71.3
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-212 742.7 533 70.2
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.7e-212 742.3 535 69.5
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.7e-212 742.3 532 71.6
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.5e-212 741.9 567 67.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.0e-212 741.1 536 70.5
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 6.0e-212 741.1 504 74.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 6.0e-212 741.1 538 70.1
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.8e-212 740.7 466 76.6
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.0e-211 740.3 535 70.1
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.0e-211 740.3 535 70.8
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.5e-210 736.5 504 74.0
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.5e-210 735.7 484 75.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 5.6e-210 734.6 537 68.7
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 4.0e-208 728.4 531 71.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.2e-207 726.9 523 71.5
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 7.6e-207 724.2 524 71.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.2e-205 718.8 503 73.0
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 4.2e-205 718.4 524 69.5
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-204 716.8 530 67.9
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-204 716.8 530 67.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 5.1e-203 711.4 532 68.0
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 4.3e-202 708.4 535 69.3
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.6e-201 705.3 534 68.5
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.8e-200 703.0 534 68.4
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 2.4e-200 702.6 534 67.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.1e-200 702.2 534 68.2
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.4e-199 698.7 501 71.9
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 6.4e-198 694.5 535 67.5
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.4e-197 693.3 399 81.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 7.1e-197 691.0 536 65.5
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 3.5e-196 688.7 547 66.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 4.6e-196 688.3 523 67.7
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 9.6e-194 680.6 539 69.2
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.2e-193 677.9 523 68.3
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.7e-185 652.1 547 63.8
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.6e-183 646.0 543 62.4
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.9e-182 642.5 397 77.1
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.1e-181 640.6 502 66.7
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 9.3e-181 637.5 539 62.3
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.3e-170 602.4 537 60.5
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 2.6e-167 592.8 483 63.8
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.0e-166 590.9 541 58.4
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.5e-157 558.5 533 59.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 2.7e-156 556.2 413 69.5
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 6.7e-155 551.6 509 57.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-154 550.8 354 79.4
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.0e-151 540.0 537 54.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.9e-150 536.2 555 53.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.2e-145 520.0 441 64.2
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.2e-141 506.1 362 72.4
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.4e-138 496.1 468 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.8e-137 493.0 562 49.6
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.5e-130 470.7 544 47.4
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.4e-128 462.2 388 63.4
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 1.5e-125 454.1 544 48.7
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.1e-124 450.3 391 63.7
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.3e-102 377.1 301 59.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.1e-99 368.2 620 39.0
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 5.8e-98 362.5 504 44.6
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 3.5e-95 353.2 391 55.0
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 7.4e-69 265.8 168 82.7
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.9e-61 241.1 309 48.9
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.0e-57 228.8 455 32.7
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.5e-56 224.2 242 52.9
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 5.9e-50 203.0 494 32.0
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 5.5e-48 196.4 403 33.3
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.6e-45 187.6 374 36.1
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 7.4e-45 186.0 91 93.4
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.9e-41 174.1 155 60.6
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.4e-40 171.8 113 77.9
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 2.1e-39 167.9 92 82.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 4.4e-37 160.2 169 50.3
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.3e-36 158.7 113 68.1
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.1e-35 153.7 415 29.6
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 8.5e-33 146.0 138 63.0
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.2e-31 142.1 149 62.4
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.3e-22 111.3 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.0e-18 98.2 166 39.8
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.4e-11 74.7 35 94.3
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.6e-10 72.0 35 88.6
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 4.5e-10 70.5 56 60.7
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 2.9e-09 67.8 36 80.6
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 5.0e-09 67.0 36 83.3
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 3.3e-08 64.3 98 40.8
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 6.8e-06 56.6 126 27.8


User provided reference genes

Program Settings