Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.3e-140 500.7 251 100.0
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.9e-113 411.8 219 91.8
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 3.9e-113 411.8 219 91.8
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.4e-109 398.3 219 87.2
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 7.8e-106 387.5 223 86.5
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-104 383.3 238 83.2
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.6e-87 326.6 197 82.2
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.1e-83 311.2 221 68.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 9.3e-83 310.8 221 68.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.3e-79 300.4 220 70.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.4e-78 296.2 220 67.7
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.1e-78 295.8 247 61.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.3e-78 295.0 220 68.2
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.2e-76 289.7 223 65.5
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.4e-75 287.0 220 64.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 5.5e-75 285.0 224 65.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-74 283.9 220 64.1
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.2e-74 283.9 222 64.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.1e-74 283.1 238 62.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.1e-74 283.1 220 67.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.1e-74 283.1 220 65.5
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.1e-74 283.1 220 65.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.8e-73 280.0 220 63.6
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 5.1e-73 278.5 222 64.0
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 4.3e-72 275.4 220 61.8
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.6e-71 273.5 218 63.3
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.6e-71 273.5 220 64.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 6.2e-71 271.6 219 62.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.8e-70 270.0 220 62.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.4e-70 269.6 222 61.3
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.1e-70 269.2 221 64.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 4.1e-70 268.9 224 62.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.3e-70 268.5 218 60.6
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.3e-70 268.5 221 63.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.9e-70 268.1 221 63.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 9.0e-70 267.7 222 62.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.0e-69 266.5 220 61.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.6e-69 266.2 225 61.3
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.6e-69 266.2 220 60.5
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 3.4e-69 265.8 179 72.1
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.5e-69 265.4 219 60.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.5e-69 265.4 220 60.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 7.6e-69 264.6 223 60.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 7.6e-69 264.6 222 63.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.0e-68 264.2 222 62.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-68 263.8 163 77.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 2.2e-68 263.1 221 60.6
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.8e-68 262.3 177 71.8
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 5.0e-68 261.9 254 53.9
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.5e-68 261.5 251 55.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 8.4e-68 261.2 220 62.7
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.5e-67 259.6 221 60.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.2e-67 258.8 248 57.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 5.5e-67 258.5 178 71.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 5.5e-67 258.5 178 71.9
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.3e-67 257.7 178 71.9
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-66 257.3 220 62.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-66 257.3 220 62.7
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.2e-66 257.3 220 62.3
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.2e-66 257.3 220 62.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.6e-66 256.9 238 59.2
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.1e-66 256.5 228 60.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.1e-66 256.5 228 60.5
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-66 256.5 232 60.3
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.7e-66 256.1 220 60.5
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.7e-66 256.1 220 60.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.7e-66 256.1 220 61.8
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 4.6e-66 255.4 222 60.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.6e-66 255.4 234 60.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 7.9e-66 254.6 247 55.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 7.9e-66 254.6 221 58.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-66 254.6 221 58.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-66 254.6 226 58.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.0e-65 254.2 222 57.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.3e-65 253.8 237 57.0
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.8e-65 253.4 220 61.8
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.8e-65 253.4 223 59.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.3e-65 253.1 239 57.7
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.9e-65 252.3 219 59.4
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 5.1e-65 251.9 222 59.5
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.7e-65 251.1 243 57.2
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 1.1e-64 250.8 244 54.5
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.5e-64 250.4 220 61.4
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-64 250.4 229 59.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.9e-64 250.0 165 72.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-64 249.6 247 54.7
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-64 249.6 221 57.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 2.5e-64 249.6 238 58.0
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.3e-64 249.2 264 51.1
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.3e-64 249.2 223 60.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-63 246.9 219 59.4
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.2e-63 246.5 225 57.8
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.7e-63 245.7 231 56.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.8e-63 245.4 213 61.5
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.8e-63 245.4 307 46.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.3e-63 245.0 225 57.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 8.2e-63 244.6 225 58.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.1e-62 244.2 221 58.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.8e-62 243.4 162 70.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.8e-62 243.4 166 71.1
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.8e-62 243.4 220 59.1
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.4e-62 243.0 218 61.0
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.4e-62 243.0 183 68.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.1e-62 242.3 214 60.3
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.1e-62 242.3 250 54.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.3e-62 241.9 247 54.3
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.5e-61 240.4 221 56.6
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.5e-61 240.4 251 54.2
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.6e-61 239.6 222 57.7
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.4e-61 239.2 244 54.1
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 5.9e-61 238.4 220 59.5
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 5.9e-61 238.4 224 57.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 5.9e-61 238.4 165 70.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.9e-60 236.1 162 70.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.5e-60 234.6 226 55.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.1e-59 234.2 219 55.7
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.1e-59 234.2 255 52.5
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.9e-59 233.4 218 57.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.5e-59 231.9 212 54.2
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 7.2e-59 231.5 176 64.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-58 230.7 251 50.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.7e-58 229.6 162 67.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.6e-58 229.2 162 67.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.6e-58 229.2 213 54.9
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.0e-57 227.6 162 67.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.0e-57 226.1 164 65.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 5.1e-57 225.3 165 67.9
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 5.1e-57 225.3 215 55.3
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 9.7e-56 221.1 162 66.7
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.3e-55 220.7 220 54.1
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.7e-55 220.3 180 63.3
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.2e-55 219.9 181 62.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.3e-55 218.4 162 64.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 9.1e-54 214.5 180 61.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.5e-53 213.8 160 66.9
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.5e-53 213.8 182 61.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-52 210.3 159 63.5
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.9e-52 209.5 145 65.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 3.2e-51 206.1 165 62.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.8e-49 200.3 136 70.6
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.7e-48 195.3 174 60.9
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 4.8e-47 192.2 162 58.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.4e-46 190.7 212 50.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.6e-45 187.2 168 59.5
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-43 181.0 200 53.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-43 181.0 200 53.0
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.0e-41 172.9 114 66.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 7.5e-40 168.3 107 71.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.2e-35 152.9 159 49.1
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.6e-34 149.4 152 50.7
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.1e-30 136.0 242 36.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 9.4e-27 124.8 127 49.6
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 8.6e-20 101.7 113 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 5.6e-19 99.0 95 51.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.1e-14 82.8 108 49.1
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.7e-13 80.1 223 28.7
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.6e-13 79.3 70 52.9
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.5e-11 74.3 52 63.5
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.4e-09 67.8 43 65.1


User provided reference genes

Program Settings