Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.7e-84 313.9 154 100.0
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.7e-72 275.4 158 89.9
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 6.0e-48 194.5 170 65.9
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.7e-47 193.0 177 62.7
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.7e-47 193.0 170 65.9
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 3.9e-47 191.8 167 65.9
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.1e-46 190.3 162 64.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.9e-46 189.5 167 63.5
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.5e-46 189.1 160 62.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.3e-46 188.3 167 64.1
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 4.3e-46 188.3 158 63.9
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 7.3e-46 187.6 167 64.1
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 9.5e-46 187.2 162 66.0
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.2e-45 186.8 160 61.9
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.6e-45 186.4 165 63.6
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.6e-45 186.4 165 63.6
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.1e-45 186.0 166 61.4
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.8e-45 185.7 165 65.5
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 8.1e-45 184.1 163 62.0
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 1.4e-44 183.3 164 64.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-44 183.3 159 64.2
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-44 183.3 159 64.2
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 8.9e-44 180.6 187 55.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 1.5e-43 179.9 173 60.1
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 2.0e-43 179.5 167 60.5
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 5.8e-43 177.9 172 61.0
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 9.8e-43 177.2 162 63.6
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.3e-42 176.8 162 60.5
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.2e-42 176.0 168 62.5
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 2.2e-42 176.0 171 59.6
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 2.9e-42 175.6 163 60.1
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 3.7e-42 175.3 168 60.7
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 6.4e-42 174.5 159 61.6
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 8.3e-42 174.1 158 62.7
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.1e-41 173.7 176 57.4
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.1e-41 173.7 161 64.6
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 1.9e-41 172.9 163 61.3
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 3.2e-41 172.2 162 62.3
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 3.2e-41 172.2 178 57.3
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 5.4e-41 171.4 161 62.1
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 2.1e-40 169.5 163 60.1
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 2.7e-40 169.1 159 62.9
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.0e-39 167.2 161 59.0
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.3e-39 166.8 160 61.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.7e-39 166.4 172 58.1
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.0e-39 165.6 160 62.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.0e-39 165.6 162 59.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.9e-39 165.2 159 61.0
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 5.1e-39 164.9 169 58.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 8.6e-39 164.1 159 60.4
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.1e-38 163.7 159 61.0
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 1.1e-38 163.7 159 61.0
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.5e-38 163.3 172 57.6
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.5e-38 163.3 162 56.2
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.9e-38 162.9 159 60.4
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.9e-38 162.9 177 56.5
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.5e-38 162.5 174 56.9
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 3.3e-38 162.2 164 56.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 4.3e-38 161.8 108 78.7
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 5.6e-38 161.4 159 61.0
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 9.5e-38 160.6 193 50.3
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 2.8e-37 159.1 159 61.6
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.6e-37 158.7 173 56.6
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 3.6e-37 158.7 169 57.4
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 4.7e-37 158.3 171 53.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 4.7e-37 158.3 103 78.6
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 8.1e-37 157.5 158 57.0
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 8.1e-37 157.5 157 58.6
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.1e-36 157.1 156 60.3
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 1.1e-36 157.1 103 78.6
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 2.3e-36 156.0 154 58.4
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 3.1e-36 155.6 160 57.5
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 4.0e-36 155.2 103 75.7
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 4.0e-36 155.2 169 55.0
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.0e-36 155.2 158 58.9
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 5.2e-36 154.8 157 59.2
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 5.2e-36 154.8 103 76.7
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 5.2e-36 154.8 106 80.2
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 5.2e-36 154.8 108 73.1
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 6.8e-36 154.5 156 59.6
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.2e-35 153.7 169 56.2
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 1.5e-35 153.3 165 58.2
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.0e-35 152.9 166 54.2
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.6e-35 152.5 162 57.4
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.6e-35 152.5 162 57.4
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.6e-35 152.5 160 56.2
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 2.6e-35 152.5 103 75.7
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 4.4e-35 151.8 104 76.9
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 5.8e-35 151.4 157 58.0
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 7.6e-35 151.0 117 68.4
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.3e-34 150.2 101 79.2
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 1.3e-34 150.2 173 52.0
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 2.9e-34 149.1 165 55.2
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 8.4e-34 147.5 162 54.9
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.4e-33 146.0 177 50.3
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 3.2e-33 145.6 160 53.8
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 4.1e-33 145.2 103 74.8
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 5.4e-33 144.8 163 54.6
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 9.2e-33 144.1 164 55.5
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.2e-32 143.7 163 54.0
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.2e-32 143.7 163 54.0
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.2e-32 143.7 168 54.8
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.6e-32 143.3 172 52.9
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.6e-32 143.3 163 54.0
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 2.1e-32 142.9 163 53.4
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 4.6e-32 141.7 163 52.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 6.0e-32 141.4 168 53.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 6.0e-32 141.4 172 52.3
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.0e-31 140.6 173 52.0
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 1.7e-31 139.8 166 54.2
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 2.3e-31 139.4 166 54.2
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 2.3e-31 139.4 156 56.4
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 3.0e-31 139.0 166 53.6
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 3.9e-31 138.7 141 59.6
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 5.1e-31 138.3 230 41.7
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 6.6e-31 137.9 165 52.7
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 1.1e-30 137.1 164 51.2
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 1.1e-30 137.1 164 47.6
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-30 136.0 171 51.5
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.5e-30 136.0 106 66.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 5.6e-30 134.8 87 77.0
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.2e-29 133.7 83 80.7
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 6.2e-29 131.3 99 68.7
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 6.2e-29 131.3 105 64.8
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 2.0e-27 126.3 82 74.4
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.4e-27 125.6 163 52.1
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.4e-27 125.2 117 57.3
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 2.9e-26 122.5 72 81.9
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 4.9e-26 121.7 156 52.6
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 5.4e-25 118.2 101 65.3
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.1e-25 117.9 165 42.4
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 2.1e-24 116.3 84 72.6
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.0e-23 112.5 117 50.4
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 7.3e-22 107.8 107 56.1
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.3e-21 107.1 86 66.3
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.6e-21 106.7 88 61.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.4e-20 102.8 85 62.4
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.9e-20 101.3 83 60.2
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 9.0e-20 100.9 134 45.5
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 7.6e-19 97.8 75 62.7
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 8.4e-18 94.4 86 55.8
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.9e-17 93.2 71 63.4
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.7e-16 89.4 75 66.7
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 7.3e-14 81.3 56 73.2
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 2.1e-13 79.7 47 78.7
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 2.4e-09 66.2 83 42.2
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.6e-08 63.5 38 78.9
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 5.1e-07 58.5 114 35.1
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 6.7e-07 58.2 34 82.4
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 8.7e-07 57.8 40 65.0


User provided reference genes

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