Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003995g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 4.0e-179 631.3 326 100.0
Nitab4.5_0000040g0300 Nicotiana tabacum HOM05D000184 ORTHO05D000032 4.9e-116 421.8 259 88.8
CAN.G1604.3 Capsicum annuum HOM05D000184 ORTHO05D000032 6.2e-63 245.4 286 57.7
PGSC0003DMG400018426 Solanum tuberosum HOM05D000184 ORTHO05D000032 4.3e-56 222.6 263 59.3
Sopen05g003740 Solanum pennellii HOM05D000184 ORTHO05D000032 7.4e-56 221.9 268 57.8
Solyc05g007890.4 Solanum lycopersicum HOM05D000184 ORTHO05D000032 1.6e-55 220.7 265 58.9
Peaxi162Scf00222g00527 Petunia axillaris HOM05D000184 ORTHO05D000032 1.3e-36 157.9 195 52.8
Duzib251G0513 Durio zibethinus HOM05D000184 ORTHO05D000032 1.8e-33 147.5 287 42.5
CiPaw.06G086100 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.9e-33 146.4 244 46.7
Prupe.1G275900 Prunus persica HOM05D000184 ORTHO05D000032 3.9e-33 146.4 259 44.8
Manes.01G035100 Manihot esculenta HOM05D000184 ORTHO05D000032 5.1e-33 146.0 262 44.7
Cpa.g.sc128.40 Carica papaya HOM05D000184 ORTHO05D000032 1.1e-32 144.8 256 43.4
QL03p068721 Quercus lobata HOM05D000184 ORTHO05D000032 1.5e-32 144.4 277 43.0
CiPaw.05G133800 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.3e-32 143.3 250 44.8
Duzib248G0760 Durio zibethinus HOM05D000184 ORTHO05D000032 7.4e-32 142.1 258 44.6
Cc11_g12890 Coffea canephora HOM05D000184 ORTHO05D000032 1.3e-31 141.4 236 47.9
Hma1.2p1_0795F.1_g218940 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 2.2e-31 140.6 263 44.5
Manes.05G101800 Manihot esculenta HOM05D000184 ORTHO05D000032 6.3e-31 139.0 255 43.9
Oeu014036.1 Olea europaea HOM05D000184 ORTHO05D000032 2.4e-30 137.1 283 39.2
RcHm_v2.0_Chr4g0439621 Rosa chinensis HOM05D000184 ORTHO05D000032 2.4e-30 137.1 252 42.9
FvH4_4g31230 Fragaria vesca HOM05D000184 ORTHO05D000032 3.1e-30 136.7 231 43.7
FAN12G3481 Fragaria x ananassa HOM05D000184 ORTHO05D000032 3.1e-30 136.7 231 43.7
Thecc.02G344600 Theobroma cacao HOM05D000184 ORTHO05D000032 4.1e-30 136.3 258 45.3
CANSAT64G1725 Cannabis sativa HOM05D000184 ORTHO05D000032 5.3e-30 136.0 239 43.5
FAN17G0546 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.0e-29 134.0 231 43.3
Gorai.013G086300 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.0e-29 134.0 256 42.2
FAN07G0534 Fragaria x ananassa HOM05D000506 ORTHO05D000369 1.0e-28 131.7 308 38.0
Potri.008G087600 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.0e-28 131.7 263 40.7
Lj6A786T67 Lonicera japonica HOM05D000184 ORTHO05D000032 2.2e-28 130.6 244 43.9
MD16G1071600 Malus domestica HOM05D000184 ORTHO05D000032 1.1e-27 128.3 253 41.5
Dinv34145 Davidia involucrata HOM05D000184 ORTHO05D000032 1.9e-27 127.5 190 47.9
Sabra08G0065300 Salix brachista HOM05D000184 ORTHO05D000032 1.9e-27 127.5 214 45.3
Ciclev10031937m.g Citrus clementina HOM05D000184 ORTHO05D000032 4.2e-27 126.3 263 40.7
MD13G1070900 Malus domestica HOM05D000184 ORTHO05D000032 4.2e-27 126.3 212 45.3
Haze_12001 Corylus avellana HOM05D000184 ORTHO05D000032 5.5e-27 125.9 272 39.7
Gohir.D04G191600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.5e-27 125.9 241 42.7
Gohir.D13G075600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.2e-26 124.8 256 41.0
Sabra10G0127700 Salix brachista HOM05D000184 ORTHO05D000032 1.2e-26 124.8 234 42.7
Duzib268G1327 Durio zibethinus HOM05D000184 ORTHO05D000032 1.6e-26 124.4 275 41.8
DCAR_031015 Daucus carota HOM05D000184 ORTHO05D000032 2.1e-26 124.0 291 39.9
Gohir.A04G147200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.1e-26 124.0 256 41.0
Gohir.A03G101500 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.7e-26 123.6 258 41.5
GSVIVG01019971001 Vitis vinifera HOM05D000184 ORTHO05D000032 3.6e-26 123.2 217 44.2
Atru.chr11.1770 Acer truncatum HOM05D000184 ORTHO05D000032 6.1e-26 122.5 262 41.2
Gorai.005G141900 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.4e-25 121.3 290 39.3
CSS0018618 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 2.3e-25 120.6 262 39.3
Dinv16656 Davidia involucrata HOM05D000184 ORTHO05D000032 2.3e-25 120.6 224 43.8
MSTRG.7795 Avicennia marina HOM05D000184 ORTHO05D000032 3.9e-25 119.8 257 40.1
Phvul.002G170700 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 6.7e-25 119.0 232 42.7
TWI79G0522 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 6.7e-25 119.0 243 40.3
Oeu005059.1 Olea europaea HOM05D000184 ORTHO05D000032 8.8e-25 118.6 272 39.7
arahy.Tifrunner.gnm1.ann1.YIX46G Arachis hypogaea HOM05D000184 ORTHO05D000032 1.1e-24 118.2 236 42.8
Cfa008970 Carpinus fangiana HOM05D000506 ORTHO05D000369 1.1e-24 118.2 259 39.0
Oeu022761.1 Olea europaea HOM05D000184 ORTHO05D000032 1.5e-24 117.9 218 43.1
Gorai.012G187000 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.0e-24 117.5 241 41.5
arahy.Tifrunner.gnm1.ann1.D45LZI Arachis hypogaea HOM05D000216 ORTHO05D001131 3.3e-24 116.7 236 42.8
Potri.010G167901 Populus trichocarpa HOM05D000184 ORTHO05D000032 4.4e-24 116.3 260 40.4
Eucgr.G02494 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.3e-23 114.8 289 37.0
Ah.03g134940 Amaranthus hybridus HOM05D000184 ORTHO05D000032 1.7e-23 114.4 246 39.0
FAN22G1399 Fragaria x ananassa HOM05D000506 ORTHO05D000369 2.2e-23 114.0 222 41.0
Ca_18829_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 3.7e-23 113.2 252 39.7
Ca_30088_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 3.7e-23 113.2 252 39.7
Glyma.02G108500 Glycine max HOM05D000184 ORTHO05D000032 4.8e-23 112.8 240 39.2
Gohir.D02G126300 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.2e-23 112.1 258 40.3
VMungo0251G2982 Vigna mungo HOM05D000184 ORTHO05D000032 1.4e-22 111.3 230 42.2
Gohir.A13G075400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.8e-22 110.9 243 41.2
Hund25227 Selenicereus undatus HOM05D000184 ORTHO05D000032 3.1e-22 110.2 227 41.4
PGR119G1816 Punica granatum HOM05D000184 ORTHO05D000032 7.0e-22 109.0 232 41.8
Oeu038422.1 Olea europaea HOM05D000184 ORTHO05D000032 1.2e-21 108.2 222 40.5
Migut.E00086 Erythranthe guttata HOM05D000184 ORTHO05D000032 4.5e-21 106.3 230 40.9
Medtr4g081710 Medicago truncatula HOM05D000184 ORTHO05D000032 4.5e-21 106.3 262 39.3
Glyma.01G049100 Glycine max HOM05D000184 ORTHO05D000032 5.9e-21 105.9 239 39.3
Nn3g17261 Nelumbo nucifera HOM05D000184 ORTHO05D000032 5.9e-21 105.9 236 35.6
Psat7g161240 Pisum sativum HOM05D000184 ORTHO05D000032 1.0e-20 105.1 227 42.7
HanXRQChr12g0380801 Helianthus annuus HOM05D000184 ORTHO05D000032 2.2e-20 104.0 225 41.3
Glyma.07G229800 Glycine max HOM05D000184 ORTHO05D000032 8.5e-20 102.1 228 40.8
Lalb_Chr04g0256001 Lupinus albus HOM05D000184 ORTHO05D000032 1.1e-19 101.7 230 39.1
Lj2g0000003 Lotus japonicus HOM05D000184 ORTHO05D000032 1.5e-19 101.3 243 38.3
Actinidia19879 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.9e-19 100.9 215 39.5
Glyma.20G035300 Glycine max HOM05D000184 ORTHO05D000032 1.9e-19 100.9 230 40.9
Sc04g0008040 Simmondsia chinensis HOM05D000184 ORTHO05D000032 3.2e-19 100.1 258 34.1
TAR629G2647 Trochodendron aralioides HOM05D000184 ORTHO05D000032 3.2e-19 100.1 301 33.6
Migut.L01279 Erythranthe guttata HOM05D000184 ORTHO05D000032 4.2e-19 99.8 236 36.0
VMungo1215G1679 Vigna mungo HOM05D000184 ORTHO05D000032 5.5e-19 99.4 238 37.8
Lalb_Chr05g0220331 Lupinus albus HOM05D000184 ORTHO05D000032 3.6e-18 96.7 232 37.9
Lalb_Chr10g0098331 Lupinus albus HOM05D000184 ORTHO05D000032 3.6e-18 96.7 219 37.9
TPR.G39163 Trifolium pratense HOM05D000184 ORTHO05D000032 3.6e-18 96.7 246 36.2
Actinidia31901 Actinidia chinensis HOM05D000184 ORTHO05D000032 4.7e-18 96.3 116 53.4
MBI02_g15398_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 6.1e-18 95.9 277 34.3
TPR.G34041 Trifolium pratense HOM05D000184 ORTHO05D000032 8.0e-18 95.5 238 39.1
Nitab4.5_0002472g0100 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.0e-17 95.1 189 38.6
Lsat_1_v5_gn_4_9740 Lactuca sativa HOM05D000184 ORTHO05D000032 1.8e-17 94.4 215 38.6
Psat2g118840 Pisum sativum HOM05D000184 ORTHO05D000032 1.8e-17 94.4 197 39.6
Phvul.002G084100 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 2.3e-17 94.0 137 46.0
AT1G69580 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 3.0e-17 93.6 225 35.1
DCAR_007159 Daucus carota HOM05D000184 ORTHO05D000032 3.0e-17 93.6 284 32.4
AUR62032797 Chenopodium quinoa HOM05D000184 ORTHO05D000032 4.0e-17 93.2 259 35.9
Lalb_Chr17g0340761 Lupinus albus HOM05D000184 ORTHO05D000032 5.2e-17 92.8 187 41.7
Carub.0002s1625 Capsella rubella HOM05D000184 ORTHO05D000032 8.8e-17 92.0 244 34.4
AL2G28720 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 1.2e-16 91.7 236 36.4
CSS0045704 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.5e-16 91.3 202 39.1
Lalb_Chr16g0385771 Lupinus albus HOM05D000184 ORTHO05D000032 1.5e-16 91.3 212 39.2
ECA234G1444 Erigeron canadensis HOM05D000184 ORTHO05D000032 2.6e-16 90.5 237 36.3
AUR62005806 Chenopodium quinoa HOM05D000184 ORTHO05D000032 7.5e-16 89.0 259 35.5
THA.LOC104822910 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 7.5e-16 89.0 184 37.0
THA.LOC104822052 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 9.7e-16 88.6 197 41.6
MSTRG.13424 Avicennia marina HOM05D000184 ORTHO05D000032 1.3e-15 88.2 245 33.5
MSTRG.707 Avicennia marina HOM05D000184 ORTHO05D000032 1.3e-15 88.2 233 36.1
HanXRQChr17g0570811 Helianthus annuus HOM05D000184 ORTHO05D000032 2.2e-15 87.4 147 44.9
EL10Ac6g13220 Beta vulgaris HOM05D000184 ORTHO05D000032 6.3e-15 85.9 318 31.8
Medtr5g041350 Medicago truncatula HOM05D000184 ORTHO05D000032 1.8e-14 84.3 248 34.7
Hma1.2p1_1297F.1_g273980 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 5.3e-14 82.8 204 38.2
Rhsim12G0064200 Rhododendron simsii HOM05D000184 ORTHO05D000032 5.3e-14 82.8 184 40.8
Ah.02g129640 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.2e-13 81.6 216 35.6
Aqoxy3G03418 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 2.0e-13 80.9 217 31.8
CARHR062530 Cardamine hirsuta HOM05D000184 ORTHO05D000032 7.7e-13 79.0 177 37.9
Sc11g0002000 Simmondsia chinensis HOM05D000184 ORTHO05D000032 1.3e-12 78.2 242 35.1
TAR374G0944 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.7e-12 77.8 234 34.6
BcaB05g24462 Brassica carinata HOM05D000184 ORTHO05D000032 2.2e-12 77.4 233 33.9
MBI05_g42873_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.2e-12 77.4 206 35.9
vmacro01264 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 8.5e-12 75.5 187 36.9
BcaC03g15095 Brassica carinata HOM05D000184 ORTHO05D000032 1.1e-11 75.1 178 36.5
C02p26560 Brassica napus HOM05D000184 ORTHO05D000032 1.1e-11 75.1 178 36.5
BolC2t08727H Brassica oleracea HOM05D000184 ORTHO05D000032 1.1e-11 75.1 178 36.5
Thhalv10018902m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 1.1e-11 75.1 211 34.6
MBI05_g10779_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 1.1e-11 75.1 223 34.1
Sp5g24700 Schrenkiella parvula HOM05D000184 ORTHO05D000032 1.5e-11 74.7 213 32.4
BraA02t06657Z Brassica rapa HOM05D000184 ORTHO05D000032 4.2e-11 73.2 206 32.0
TWI31G1165 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 4.2e-11 73.2 125 38.4
BcaB03g14730 Brassica carinata HOM05D000184 ORTHO05D000032 7.2e-11 72.4 200 34.5
A02p15980 Brassica napus HOM05D000184 ORTHO05D000032 9.4e-11 72.0 177 35.0
Nitab4.5_0001617g0010 Nicotiana tabacum HOM05D000184 ORTHO05D285167 2.1e-10 70.9 68 55.9
MBI19_g09313_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 3.6e-10 70.1 132 37.9
BcaC08g45882 Brassica carinata HOM05D000184 ORTHO05D000032 1.4e-09 68.2 205 32.7
ClCG11G007240 Citrullus lanatus HOM05D000184 ORTHO05D000032 1.4e-09 68.2 134 42.5
SGA_v2.0_scaffold302G47809 Striga asiatica HOM05D000184 ORTHO05D000032 1.8e-09 67.8 143 37.8
BcaC08g46399 Brassica carinata HOM05D000184 ORTHO05D000032 2.3e-09 67.4 241 29.9
Sabra13G0053200 Salix brachista HOM05D000184 ORTHO05D000032 2.3e-09 67.4 182 31.3
C06p43320 Brassica napus HOM05D000184 ORTHO05D000032 3.0e-09 67.0 241 29.5
BraA07t30783Z Brassica rapa HOM05D000184 ORTHO05D000032 3.0e-09 67.0 206 31.6
A07p31510 Brassica napus HOM05D000184 ORTHO05D000032 4.0e-09 66.6 206 31.6
BolC6t39408H Brassica oleracea HOM05D000184 ORTHO05D000032 4.0e-09 66.6 241 29.0
C06p36800 Brassica napus HOM05D000184 ORTHO05D000032 8.8e-09 65.5 206 32.0
BolC6t38791H Brassica oleracea HOM05D000184 ORTHO05D000032 8.8e-09 65.5 206 32.0
BraA07t31177Z Brassica rapa HOM05D000184 ORTHO05D000032 3.4e-08 63.5 212 30.7
Migut.J01031 Erythranthe guttata HOM05D000184 ORTHO05D000032 3.4e-08 63.5 176 32.4
Sed0014211 Sechium edule HOM05D000184 ORTHO05D000032 3.4e-08 63.5 179 34.6
BcaB03g15484 Brassica carinata HOM05D000184 ORTHO05D000032 7.5e-08 62.4 210 33.3
CARHR078160 Cardamine hirsuta HOM05D000184 ORTHO05D000032 7.5e-08 62.4 188 32.4
CsaV3_2G010620 Cucumis sativus L. HOM05D000184 ORTHO05D000032 7.5e-08 62.4 79 53.2
Sp1g22000 Schrenkiella parvula HOM05D000184 ORTHO05D000032 7.5e-08 62.4 242 30.6
A07p35940 Brassica napus HOM05D000184 ORTHO05D000032 9.8e-08 62.0 164 31.7
Nitab4.5_0000381g0220 Nicotiana tabacum HOM05D000184 ORTHO05D000032 9.8e-08 62.0 170 35.9
Solyc10g083340.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 9.8e-08 62.0 147 36.1
Potri.013G060200 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.7e-07 61.2 172 31.4
Duzib177G0153 Durio zibethinus HOM05D000184 ORTHO05D000032 2.8e-07 60.5 134 36.6
Rhsim04G0086400 Rhododendron simsii HOM05D000184 ORTHO05D000032 2.8e-07 60.5 155 34.2
Gohir.D08G230600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.7e-07 60.1 155 34.2
TWI60G0257 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 4.8e-07 59.7 143 33.6
vmacro09151 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 4.8e-07 59.7 167 33.5
Nitab4.5_0003610g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.3e-07 59.3 117 40.2
Glyma.12G089100 Glycine max HOM05D000184 ORTHO05D000032 8.3e-07 58.9 116 37.9
Glyma.12G184700 Glycine max HOM05D000184 ORTHO05D000032 1.1e-06 58.5 264 28.0
VMungo1080G1520 Vigna mungo HOM05D000184 ORTHO05D000032 1.4e-06 58.2 166 33.7
FAN26G2253 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.8e-06 57.8 110 41.8
Sabra19G0041000 Salix brachista HOM05D000184 ORTHO05D000032 1.8e-06 57.8 151 31.8
Actinidia17308 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.4e-06 57.4 144 34.0
AL3G13940 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 2.4e-06 57.4 170 33.5
arahy.Tifrunner.gnm1.ann1.23K5JN Arachis hypogaea HOM05D000184 ORTHO05D000032 2.4e-06 57.4 133 35.3
arahy.Tifrunner.gnm1.ann1.X8J8BT Arachis hypogaea HOM05D000184 ORTHO05D000032 2.4e-06 57.4 133 35.3
Oeu054868.1 Olea europaea HOM05D000184 ORTHO05D000032 2.4e-06 57.4 136 39.0
Sp3g03010 Schrenkiella parvula HOM05D000184 ORTHO05D000032 2.4e-06 57.4 219 29.2
Prupe.7G001700 Prunus persica HOM05D000184 ORTHO05D000032 3.1e-06 57.0 131 36.6
FAN28G1991 Fragaria x ananassa HOM05D000184 ORTHO05D000032 4.1e-06 56.6 136 37.5
CDE04G1009 Ceratophyllum demersum HOM05D000184 ORTHO05D000032 5.4e-06 56.2 231 29.4
Lj1A1137G87 Lonicera japonica HOM05D000184 ORTHO05D000032 5.4e-06 56.2 154 33.1
Nitab4.5_0012320g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 5.4e-06 56.2 170 33.5
Thhalv10020861m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 7.0e-06 55.8 173 30.6
FAN23G2232 Fragaria x ananassa HOM05D000184 ORTHO05D000032 7.0e-06 55.8 110 40.9
BcaC07g39270 Brassica carinata HOM05D000184 ORTHO05D000032 9.1e-06 55.5 207 30.0
C08p22800 Brassica napus HOM05D000184 ORTHO05D000032 9.1e-06 55.5 207 30.0
BolC8t49916H Brassica oleracea HOM05D000184 ORTHO05D000032 9.1e-06 55.5 207 30.0
COL.COLO4_13622 Corchorus olitorius HOM05D000184 ORTHO05D000032 9.1e-06 55.5 142 33.1
SEGI_24367 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 9.1e-06 55.5 129 34.9
TWI34G1663 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 9.1e-06 55.5 154 32.5


User provided reference genes

Program Settings