Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003987g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.1e-115 419.1 222 100.0
Nitab4.5_0015287g0010 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.6e-84 315.8 222 79.3
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 2.9e-80 302.4 203 80.3
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 9.1e-74 280.8 191 80.1
CAN.G790.70 Capsicum annuum HOM05D003357 ORTHO05D003779 1.4e-61 240.4 177 75.1
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 6.0e-41 171.8 195 47.7
Sopen03g041280 Solanum pennellii HOM05D003357 ORTHO05D003779 3.3e-39 166.0 102 86.3
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 5.6e-39 165.2 195 46.2
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 1.5e-36 157.1 190 48.4
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 1.5e-36 157.1 190 48.4
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 3.7e-35 152.5 198 41.9
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 3.7e-35 152.5 188 45.2
SGA_v2.0_scaffold71G23911 Striga asiatica HOM05D003357 ORTHO05D003779 3.7e-35 152.5 193 45.1
Ciclev10026388m.g Citrus clementina HOM05D003357 ORTHO05D003779 5.1e-32 142.1 198 37.9
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 5.6e-31 138.7 191 43.5
Duzib235G0273 Durio zibethinus HOM05D003357 ORTHO05D003779 9.5e-31 137.9 208 41.3
MD17G1152300 Malus domestica HOM05D003357 ORTHO05D003779 1.2e-30 137.5 200 43.0
Prupe.3G032500 Prunus persica HOM05D003357 ORTHO05D003779 1.2e-30 137.5 190 41.6
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.1e-30 136.7 197 38.6
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 6.2e-30 135.2 178 44.4
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.1e-29 132.9 197 38.1
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 8.9e-29 131.3 190 41.6
DCAR_016095 Daucus carota HOM05D003357 ORTHO05D003779 8.9e-29 131.3 212 36.3
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 8.9e-29 131.3 197 38.1
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 1.2e-28 131.0 160 46.9
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.2e-28 131.0 210 42.4
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.2e-28 131.0 181 39.8
Lsat_1_v5_gn_0_41661 Lactuca sativa HOM05D003357 ORTHO05D003779 8.4e-27 124.8 196 33.7
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 1.4e-26 124.0 181 36.5
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.9e-26 123.6 201 38.3
Oeu013442.1 Olea europaea HOM05D000643 ORTHO05D000663 3.2e-26 122.9 162 40.1
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 9.2e-26 121.3 201 37.3
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.6e-25 120.6 198 38.4
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 4.6e-25 119.0 212 34.9
COL.COLO4_30848 Corchorus olitorius HOM05D003357 ORTHO05D003779 3.0e-24 116.3 181 38.7
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 5.6e-23 112.1 203 32.0
HanXRQChr15g0497241 Helianthus annuus HOM05D003357 ORTHO05D003779 6.4e-19 98.6 171 32.2
CsaV3_7G034060 Cucumis sativus L. HOM05D003357 ORTHO05D003779 7.1e-18 95.1 193 31.1
Sed0022278 Sechium edule HOM05D003357 ORTHO05D003779 2.1e-17 93.6 199 30.7
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 3.5e-17 92.8 187 30.5
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.1e-15 87.8 188 29.8
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.5e-15 87.4 163 35.0
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.5e-15 87.4 150 34.7
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 3.3e-15 86.3 190 29.5
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 4.3e-15 85.9 200 31.0
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 5.6e-15 85.5 155 40.0
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.3e-14 84.3 181 31.5
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 4.8e-14 82.4 151 37.7
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 4.8e-14 82.4 154 33.1
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 8.1e-14 81.6 182 34.6
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.1e-13 81.3 160 35.6
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 1.4e-13 80.9 158 35.4
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.4e-13 80.9 147 31.3
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.8e-13 80.5 150 36.7
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.8e-13 80.5 150 36.7
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 2.4e-13 80.1 150 36.7
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 2.4e-13 80.1 174 35.6
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.1e-13 79.7 164 34.1
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 3.1e-13 79.7 164 34.1
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 6.9e-13 78.6 164 33.5
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 6.9e-13 78.6 158 35.4
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 9.0e-13 78.2 181 34.3
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 9.0e-13 78.2 151 31.8
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 9.0e-13 78.2 158 34.2
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.2e-12 77.8 152 34.2
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 1.2e-12 77.8 152 34.2
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 1.2e-12 77.8 168 31.0
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 2.0e-12 77.0 168 31.0
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 2.0e-12 77.0 158 33.5
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 2.6e-12 76.6 161 32.9
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 2.6e-12 76.6 147 36.1
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 2.6e-12 76.6 145 32.4
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 3.4e-12 76.3 168 31.5
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 3.4e-12 76.3 159 32.1
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 3.4e-12 76.3 158 34.2
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 4.5e-12 75.9 161 32.9
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 4.5e-12 75.9 152 34.9
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 5.8e-12 75.5 178 33.1
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 5.8e-12 75.5 183 30.1
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 7.6e-12 75.1 158 32.3
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 9.9e-12 74.7 157 33.8
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 9.9e-12 74.7 154 35.7
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 9.9e-12 74.7 170 31.2
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 1.3e-11 74.3 164 31.1
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 1.3e-11 74.3 154 33.8
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 1.3e-11 74.3 152 34.9
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 1.7e-11 73.9 173 29.5
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 1.7e-11 73.9 149 32.9
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.7e-11 73.9 153 34.0
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 1.7e-11 73.9 153 34.0
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 1.7e-11 73.9 153 34.0
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 2.2e-11 73.6 150 33.3
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.2e-11 73.6 178 32.6
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 2.2e-11 73.6 171 30.4
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.2e-11 73.6 160 31.9
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.2e-11 73.6 156 33.3
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 2.9e-11 73.2 154 33.1
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 2.9e-11 73.2 143 37.1
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.8e-11 72.8 153 33.3
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 4.9e-11 72.4 155 32.3
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 4.9e-11 72.4 157 32.5
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 4.9e-11 72.4 163 30.1
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 4.9e-11 72.4 187 31.6
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 4.9e-11 72.4 161 31.1
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 6.4e-11 72.0 153 33.3
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 6.4e-11 72.0 163 31.9
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 6.4e-11 72.0 161 31.7
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 8.4e-11 71.6 151 32.5
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 8.4e-11 71.6 162 34.0
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 1.1e-10 71.2 155 31.6
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 1.1e-10 71.2 155 31.6
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 1.1e-10 71.2 155 31.6
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.1e-10 71.2 151 31.8
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 1.1e-10 71.2 168 32.7
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 1.4e-10 70.9 158 32.3
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.4e-10 70.9 158 32.9
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.4e-10 70.9 160 31.2
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 1.4e-10 70.9 167 29.9
PSO421G0588 Papaver somniferum HOM05D003357 ORTHO05D003779 1.4e-10 70.9 133 32.3
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 2.4e-10 70.1 153 33.3
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 2.4e-10 70.1 142 35.2
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 3.2e-10 69.7 149 30.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 4.2e-10 69.3 165 31.5
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 5.4e-10 68.9 154 31.2
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 5.4e-10 68.9 154 31.2
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 5.4e-10 68.9 154 31.2
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 5.4e-10 68.9 154 31.2
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 5.4e-10 68.9 165 29.1
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 5.4e-10 68.9 167 28.1
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 7.1e-10 68.6 157 31.8
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 7.1e-10 68.6 150 31.3
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 7.1e-10 68.6 150 31.3
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 9.3e-10 68.2 169 29.6
Zm00001eb099990 Zea mays HOM05D003357 ORTHO05D003779 9.3e-10 68.2 158 29.1
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 1.2e-09 67.8 163 31.3
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.2e-09 67.8 164 29.9
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 1.2e-09 67.8 154 31.2
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 1.6e-09 67.4 145 32.4
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.6e-09 67.4 162 30.9
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.6e-09 67.4 165 31.5
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 1.6e-09 67.4 129 32.6
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.6e-09 67.4 162 30.2
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 1.6e-09 67.4 165 29.1
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 1.6e-09 67.4 162 33.3
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 2.1e-09 67.0 169 28.4
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 2.1e-09 67.0 139 32.4
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 2.7e-09 66.6 155 31.6
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 2.7e-09 66.6 155 31.6
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 2.7e-09 66.6 155 31.6
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 2.7e-09 66.6 177 30.5
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 3.5e-09 66.2 172 32.0
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 6.0e-09 65.5 149 30.2
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 7.9e-09 65.1 155 31.6
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 1.0e-08 64.7 125 35.2
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 1.3e-08 64.3 172 29.7
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 3.0e-08 63.2 145 33.1
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 3.0e-08 63.2 200 28.0
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 3.9e-08 62.8 151 31.8
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 3.9e-08 62.8 151 31.8
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 8.7e-08 61.6 150 29.3
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.1e-07 61.2 147 32.0
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 1.1e-07 61.2 160 26.2
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 1.1e-07 61.2 200 28.5
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 1.1e-07 61.2 126 32.5
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 1.1e-07 61.2 158 31.6
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 1.5e-07 60.8 185 25.9
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 1.5e-07 60.8 203 27.6
Dinv28273 Davidia involucrata HOM05D000973 ORTHO05D000652 1.9e-07 60.5 203 28.1
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 2.5e-07 60.1 157 26.8
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 2.5e-07 60.1 181 30.4
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 4.3e-07 59.3 159 26.4
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 4.3e-07 59.3 143 29.4
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 5.6e-07 58.9 171 25.1
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 9.6e-07 58.2 163 31.3
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 1.6e-06 57.4 151 26.5
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 3.6e-06 56.2 189 27.0
ClCG03G014140 Citrullus lanatus HOM05D000973 ORTHO05D000652 4.8e-06 55.8 204 26.5
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 8.1e-06 55.1 199 26.1


User provided reference genes

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