Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 8.7e-137 490.3 254 100.0
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 2.4e-126 455.7 245 96.7
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 2.4e-110 402.5 247 88.7
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 7.9e-106 387.5 255 82.4
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 3.7e-103 378.6 250 82.0
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 2.4e-102 375.9 254 80.3
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 2.4e-102 375.9 249 81.9
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 3.1e-102 375.6 248 81.9
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 2.0e-101 372.9 247 82.2
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 5.9e-101 371.3 247 80.6
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 8.5e-100 367.5 252 81.7
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 8.5e-100 367.5 267 77.2
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 4.6e-98 361.7 246 81.7
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 6.1e-98 361.3 251 78.9
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 7.9e-98 360.9 253 78.7
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 1.4e-97 360.1 259 76.4
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 2.3e-97 359.4 247 79.4
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 1.1e-96 357.1 253 77.5
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 1.5e-96 356.7 260 76.9
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 3.3e-96 355.5 264 76.1
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 3.3e-96 355.5 246 76.8
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 4.3e-96 355.1 257 75.9
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 7.4e-96 354.4 260 76.5
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 1.7e-95 353.2 255 74.5
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 3.7e-95 352.1 251 76.5
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 6.3e-95 351.3 246 76.4
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 8.2e-95 350.9 245 77.6
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 1.1e-94 350.5 295 68.1
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 1.1e-94 350.5 261 75.1
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 1.8e-94 349.7 246 75.6
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 3.1e-94 349.0 262 74.8
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 3.1e-94 349.0 258 76.7
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 4.1e-94 348.6 256 75.8
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 4.1e-94 348.6 289 69.2
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 5.3e-94 348.2 257 75.9
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 5.3e-94 348.2 251 74.9
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 5.3e-94 348.2 248 75.8
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 9.1e-94 347.4 251 74.5
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 1.5e-93 346.7 256 73.8
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 2.6e-93 345.9 245 77.1
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 2.6e-93 345.9 253 75.5
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 3.4e-93 345.5 247 74.9
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 4.5e-93 345.1 257 75.9
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 4.5e-93 345.1 257 75.9
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 5.9e-93 344.7 251 74.5
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 7.7e-93 344.4 248 75.4
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 1.0e-92 344.0 251 74.9
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 1.7e-92 343.2 254 75.2
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 2.2e-92 342.8 257 76.7
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 3.8e-92 342.0 257 74.7
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 3.8e-92 342.0 257 75.5
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 5.0e-92 341.7 250 75.2
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 6.5e-92 341.3 245 75.9
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 1.1e-91 340.5 250 72.8
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 1.4e-91 340.1 249 75.1
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 1.9e-91 339.7 248 76.2
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 2.5e-91 339.3 250 72.8
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 4.2e-91 338.6 245 75.9
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 4.2e-91 338.6 245 75.1
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 4.2e-91 338.6 245 75.1
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 5.5e-91 338.2 245 75.9
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 1.2e-90 337.0 245 74.3
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 1.2e-90 337.0 260 72.3
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 1.2e-90 337.0 254 73.6
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.6e-90 336.7 246 76.4
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 1.6e-90 336.7 245 76.3
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 2.1e-90 336.3 245 74.7
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 2.7e-90 335.9 245 74.3
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 3.6e-90 335.5 258 71.7
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 3.6e-90 335.5 258 71.7
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 4.7e-90 335.1 259 73.7
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 6.1e-90 334.7 247 75.7
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 6.1e-90 334.7 246 73.6
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 6.1e-90 334.7 256 73.0
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 7.9e-90 334.3 245 72.2
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 7.9e-90 334.3 245 72.2
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 7.9e-90 334.3 245 72.2
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 1.0e-89 334.0 248 73.0
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 1.4e-89 333.6 259 72.6
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 2.3e-89 332.8 245 73.9
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 2.3e-89 332.8 245 73.9
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 2.3e-89 332.8 275 69.5
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 3.0e-89 332.4 245 74.3
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 5.1e-89 331.6 247 75.3
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 1.5e-88 330.1 250 73.6
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 2.0e-88 329.7 245 74.3
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 2.0e-88 329.7 245 71.8
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 3.3e-88 328.9 246 72.8
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 4.4e-88 328.6 255 72.2
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 4.4e-88 328.6 245 74.3
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 9.7e-88 327.4 245 72.2
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 9.7e-88 327.4 258 71.7
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 9.7e-88 327.4 253 71.1
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 9.7e-88 327.4 258 72.9
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.3e-87 327.0 246 72.0
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 1.7e-87 326.6 274 67.9
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 3.7e-87 325.5 245 72.7
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 3.7e-87 325.5 245 72.7
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 6.3e-87 324.7 257 70.4
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 6.3e-87 324.7 250 72.4
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 1.1e-86 323.9 246 72.8
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 1.1e-86 323.9 254 70.1
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.8e-86 323.2 254 69.7
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 9.1e-86 320.9 250 70.8
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 9.1e-86 320.9 245 71.4
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 1.6e-85 320.1 251 69.3
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.6e-85 320.1 215 80.5
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 3.5e-85 318.9 247 71.3
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 6.5e-84 314.7 200 83.0
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 3.6e-82 308.9 253 69.6
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 4.7e-82 308.5 246 71.1
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 8.0e-82 307.8 224 77.7
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 3.0e-81 305.8 227 75.8
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 8.8e-81 304.3 207 78.7
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 1.1e-80 303.9 246 69.9
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 1.5e-80 303.5 248 71.0
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 3.7e-79 298.9 201 77.6
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 4.8e-79 298.5 208 76.4
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 4.8e-79 298.5 199 79.9
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 6.3e-79 298.1 208 76.4
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 3.1e-78 295.8 209 72.7
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 9.1e-78 294.3 203 75.9
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 1.2e-77 293.9 204 75.0
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 4.5e-77 292.0 209 72.2
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 5.9e-77 291.6 203 75.4
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 1.0e-76 290.8 203 76.4
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 4.2e-75 285.4 191 80.6
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 6.1e-74 281.6 203 73.9
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 6.1e-74 281.6 257 65.0
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 4.4e-72 275.4 244 64.3
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 9.8e-72 274.2 251 64.1
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 2.7e-69 266.2 220 68.2
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 2.9e-68 262.7 180 79.4
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 2.5e-67 259.6 215 67.0
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 5.5e-67 258.5 207 67.6
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 5.7e-64 248.4 209 65.6
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 4.5e-61 238.8 222 64.0
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 1.0e-60 237.7 249 59.0
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 8.6e-60 234.6 168 78.6
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 9.8e-56 221.1 198 62.1
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 9.8e-56 221.1 189 63.5
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 3.2e-54 216.1 188 61.2
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.2e-53 214.2 192 61.5
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 7.8e-53 211.5 212 56.1
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 5.6e-51 205.3 149 70.5
BcaB02g10878 Brassica carinata HOM05D004080 ORTHO05D004855 3.6e-50 202.6 114 90.4
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 6.4e-47 191.8 151 72.8
HPP92_011073 Vanilla planifolia HOM05D004080 ORTHO05D004855 4.4e-40 169.1 98 84.7
MBI13_g01689_MAGBIO Magnolia biondii HOM05D004080 ORTHO05D004855 3.7e-39 166.0 99 81.8
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.0e-36 157.9 166 58.4
Gorai.012G178400 Gossypium raimondii HOM05D004080 ORTHO05D004855 4.3e-35 152.5 81 93.8
Oeu015474.1 Olea europaea HOM05D004080 ORTHO05D004855 9.5e-35 151.4 82 91.5
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 1.9e-27 127.1 105 70.5
Cre16.g687518 Chlamydomonas reinhardtii HOM05D004080 ORTHO05D004855 3.3e-27 126.3 140 50.0
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 4.9e-23 112.5 159 45.9
PRCOL_00001985 Prasinoderma coloniale HOM05D004080 ORTHO05D004855 4.2e-22 109.4 136 47.1
CDE09G0018 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 1.5e-19 100.9 62 79.0
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 1.5e-16 90.9 91 58.2
Nn6g35716 Nelumbo nucifera HOM05D004080 ORTHO05D004855 3.2e-14 83.2 60 66.7


User provided reference genes

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