Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.1e-90 336.7 167 100.0
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 3.4e-89 331.6 167 98.2
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 2.4e-79 298.9 193 80.8
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 6.6e-77 290.8 192 78.6
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 4.8e-59 231.5 198 63.6
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 1.1e-58 230.3 207 61.4
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 1.2e-57 226.9 195 63.6
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 1.5e-57 226.5 198 62.6
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 3.4e-57 225.3 203 62.1
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 5.8e-57 224.6 197 60.4
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 7.6e-57 224.2 200 63.0
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 7.6e-57 224.2 197 60.9
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 1.3e-56 223.4 201 62.2
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 1.3e-56 223.4 196 60.7
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 1.7e-56 223.0 198 62.6
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 1.7e-56 223.0 194 62.9
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 2.2e-56 222.6 206 60.2
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 2.9e-56 222.2 196 63.3
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 3.8e-56 221.9 200 62.5
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 3.2e-55 218.8 202 59.9
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 3.2e-55 218.8 197 59.9
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 3.2e-55 218.8 196 60.7
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 4.2e-55 218.4 200 61.0
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 4.2e-55 218.4 197 59.4
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 4.2e-55 218.4 198 60.6
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 5.5e-55 218.0 197 59.9
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 9.3e-55 217.2 197 59.4
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 1.2e-54 216.9 196 60.7
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 2.1e-54 216.1 202 58.9
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 2.7e-54 215.7 203 61.6
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 2.7e-54 215.7 191 62.3
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 2.7e-54 215.7 196 60.2
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 3.5e-54 215.3 182 62.1
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 4.6e-54 214.9 194 61.3
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 4.6e-54 214.9 180 63.3
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 4.6e-54 214.9 198 59.6
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 6.0e-54 214.5 200 60.0
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 7.9e-54 214.2 197 62.4
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.0e-53 213.8 197 60.9
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.0e-53 213.8 197 60.9
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 1.8e-53 213.0 200 59.5
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 1.8e-53 213.0 200 59.5
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 3.0e-53 212.2 199 56.3
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 8.7e-53 210.7 202 57.4
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 8.7e-53 210.7 197 59.4
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 1.1e-52 210.3 198 57.1
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 5.6e-52 208.0 192 59.9
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 3.7e-51 205.3 181 61.9
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 3.7e-51 205.3 189 60.8
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 1.1e-50 203.8 192 59.4
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.4e-50 203.4 153 68.6
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 2.4e-50 202.6 201 57.2
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 3.1e-50 202.2 204 57.4
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 5.3e-50 201.4 205 55.6
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 2.0e-49 199.5 173 61.8
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 2.6e-49 199.1 205 55.1
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 3.4e-49 198.7 196 55.1
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 5.8e-49 198.0 195 56.9
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 5.8e-49 198.0 197 56.3
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 5.8e-49 198.0 195 60.0
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 7.6e-49 197.6 195 56.4
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 1.3e-48 196.8 196 55.6
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 1.3e-48 196.8 196 56.1
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 1.3e-48 196.8 193 57.0
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 1.7e-48 196.4 195 55.9
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 1.7e-48 196.4 195 55.9
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 2.2e-48 196.1 194 56.2
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 2.2e-48 196.1 193 57.0
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 3.8e-48 195.3 194 55.2
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 4.9e-48 194.9 195 55.4
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 6.5e-48 194.5 195 55.4
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 6.5e-48 194.5 195 55.4
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 6.5e-48 194.5 191 56.0
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 1.1e-47 193.7 196 55.1
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 1.4e-47 193.4 209 54.5
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 1.4e-47 193.4 194 55.2
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 3.2e-47 192.2 211 55.0
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 4.2e-47 191.8 196 53.6
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 5.5e-47 191.4 213 53.1
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 1.2e-46 190.3 197 52.8
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 2.7e-46 189.1 195 52.8
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 3.5e-46 188.7 196 53.1
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 6.0e-46 188.0 196 53.1
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 6.0e-46 188.0 196 53.1
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 6.0e-46 188.0 196 53.1
Sopen05g033040 Solanum pennellii HOM05D005509 ORTHO05D006411 3.0e-45 185.7 205 53.7
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 1.1e-44 183.7 202 50.5
Solyc05g054560.3 Solanum lycopersicum HOM05D005509 ORTHO05D006411 5.7e-44 181.4 205 52.7
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 2.2e-43 179.5 200 51.5
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.8e-43 179.1 138 66.7
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 2.8e-43 179.1 197 50.3
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 6.3e-43 177.9 199 50.8
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 1.2e-41 173.7 197 51.3
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 1.2e-41 173.7 203 50.2
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 3.4e-41 172.2 201 51.2
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 1.3e-40 170.2 196 52.0
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 6.5e-40 167.9 186 52.7
PGSC0003DMG400023526 Solanum tuberosum HOM05D005509 ORTHO05D006411 6.5e-40 167.9 131 65.6
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 1.4e-39 166.8 212 44.8
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.2e-38 163.7 210 46.2
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 7.9e-38 161.0 123 66.7
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 4.3e-36 155.2 123 64.2
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 7.4e-36 154.5 144 56.9
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.0e-32 144.1 121 61.2
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 1.3e-32 143.7 115 67.0
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 1.3e-32 143.7 132 57.6
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 2.9e-32 142.5 112 65.2
CDE09G0335 Ceratophyllum demersum HOM05D002573 ORTHO05D002918 2.5e-31 139.4 142 52.8
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 3.2e-31 139.0 101 69.3
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 7.2e-31 137.9 115 65.2
Actinidia29219 Actinidia chinensis HOM05D005509 ORTHO05D006411 4.7e-30 135.2 209 46.4
HPP92_006606 Vanilla planifolia HOM05D005509 ORTHO05D006411 1.8e-26 123.2 167 45.5
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 4.2e-23 112.1 154 48.1
Pp3c12_23720 Physcomitrium patens HOM05D005509 ORTHO05D006411 3.0e-21 105.9 199 34.2
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 2.6e-20 102.8 143 38.5
Pp3c10_18090 Physcomitrium patens HOM05D005509 ORTHO05D006411 1.4e-18 97.1 181 33.1
Pp3c3_30480 Physcomitrium patens HOM05D005509 ORTHO05D006411 2.0e-17 93.2 189 29.1
Zm00001eb136610 Zea mays HOM05D005509 ORTHO05D006411 1.1e-15 87.4 124 37.1
C04p27060 Brassica napus HOM05D005509 ORTHO05D006411 2.5e-15 86.3 93 51.6
BolC4t24086H Brassica oleracea HOM05D005509 ORTHO05D006411 2.5e-15 86.3 93 51.6
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 4.2e-15 85.5 79 60.8
Hma1.2p1_2608F.1_g325340 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 4.7e-14 82.0 82 53.7
Rhsim09G0001400 Rhododendron simsii HOM05D001561 ORTHO05D001715 6.1e-14 81.6 85 51.8
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.4e-13 80.5 80 61.2
AagrBONN_evm.TU.Sc2ySwM_117.824 Anthoceros agrestis HOM05D005509 ORTHO05D006411 1.8e-13 80.1 131 32.8
Os12g0568700 Oryza sativa ssp. japonica HOM05D005509 ORTHO05D006411 3.0e-13 79.3 92 43.5
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 2.6e-12 76.3 126 42.9
Rhsim08G0179200 Rhododendron simsii HOM05D005509 ORTHO05D006411 9.7e-12 74.3 86 53.5
BcaC02g10727 Brassica carinata HOM05D005509 ORTHO05D006411 1.8e-10 70.1 124 38.7
Rhsim08G0176800 Rhododendron simsii HOM05D005509 ORTHO05D006411 1.8e-10 70.1 63 60.3
BcaB04g18041 Brassica carinata HOM05D005509 ORTHO05D006411 1.6e-09 67.0 53 64.2
BcaB05g23134 Brassica carinata HOM05D005509 ORTHO05D006411 1.6e-09 67.0 52 57.7
BcaB06g27450 Brassica carinata HOM05D005509 ORTHO05D006411 9.4e-07 57.8 60 53.3


User provided reference genes

Program Settings