Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 2615.1 1336 100.0
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 2446.0 1337 94.4
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 1914.4 1340 76.0
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 1894.8 1340 75.5
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 1820.1 1350 73.4
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 1635.2 1277 69.9
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.5e-256 890.6 1356 44.0
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 3.1e-249 866.3 1363 43.6
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 2.0e-240 837.0 1389 41.6
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 3.3e-235 819.7 1117 48.8
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 1.0e-212 745.0 1381 39.7
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 9.0e-209 731.9 1319 39.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 3.8e-199 699.9 1364 38.4
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 2.7e-197 693.7 1394 37.9
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 9.7e-195 685.3 1408 37.1
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 1.3e-194 684.9 1332 38.0
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.0e-192 677.6 932 44.2
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 7.7e-184 649.0 1376 36.8
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.7e-183 647.9 1672 33.0
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.2e-178 630.9 1472 34.8
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 1.8e-177 627.9 1398 36.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.2e-176 625.2 1361 36.7
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.6e-176 624.0 1361 36.7
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.2e-174 616.7 1432 34.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 5.5e-174 616.3 1371 36.4
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.6e-173 614.8 1383 36.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.2e-170 604.4 1376 35.5
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 2.2e-170 604.4 1398 34.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 4.8e-170 603.2 1386 35.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 6.3e-170 602.8 1372 36.5
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.1e-169 602.1 1356 35.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.4e-169 600.9 1399 34.6
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 7.0e-169 599.4 1385 35.2
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 4.5e-168 596.7 899 42.3
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 8.5e-167 592.4 1189 37.6
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.2e-165 588.6 1407 34.9
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.7e-165 587.4 1397 34.6
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.7e-165 587.4 1407 34.3
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.7e-162 578.2 1449 33.5
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 4.5e-160 570.1 1401 33.5
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 3.8e-159 567.0 1010 40.0
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.9e-158 564.7 1401 34.0
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 5.5e-158 563.1 1294 35.7
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 9.4e-158 562.4 1394 34.9
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 3.6e-157 560.5 1365 34.3
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.0e-156 558.9 1361 34.0
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.0e-156 558.9 1361 34.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 1.6e-152 545.0 1365 34.3
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.7e-151 541.6 1397 33.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.1e-150 538.9 1412 33.4
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.6e-149 535.0 1353 33.9
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 6.8e-148 529.6 1364 33.1
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.0e-147 528.1 1355 33.4
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 6.3e-146 523.1 1381 33.2
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 4.1e-145 520.4 890 39.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 3.5e-144 517.3 1346 33.4
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.7e-141 506.9 1381 34.0
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.4e-140 505.4 883 38.2
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 6.8e-140 503.1 1380 34.1
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 8.3e-138 496.1 876 38.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.4e-137 495.4 1390 32.9
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.4e-137 493.4 873 38.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.0e-135 489.2 1370 32.8
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 6.6e-135 486.5 1374 33.1
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.9e-134 485.0 1353 31.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 5.6e-134 483.4 1355 32.1
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 3.6e-133 480.7 1353 31.5
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.3e-132 478.0 1382 31.5
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.5e-131 475.3 1332 32.7
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.4e-129 468.8 1361 32.9
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.0e-128 463.4 1359 32.3
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 5.6e-126 456.8 1367 31.5
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 8.1e-125 453.0 1374 32.4
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.5e-118 432.2 1367 30.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 9.5e-118 429.5 1350 30.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.6e-117 428.7 1375 31.3
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 8.1e-117 426.4 1360 31.0
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 8.1e-117 426.4 1360 30.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.4e-116 424.9 1359 31.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 8.9e-116 422.9 1355 30.4
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.2e-114 418.3 1371 30.3
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 7.1e-113 413.3 1402 29.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 9.2e-113 412.9 1354 30.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.0e-111 409.5 434 50.2
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 3.0e-111 407.9 1344 30.1
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.9e-110 405.2 1120 31.1
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 7.3e-110 403.3 1400 29.7
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.1e-105 389.4 430 48.6
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.9e-97 362.1 414 48.6
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.3e-95 355.9 1139 31.8
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 2.7e-88 331.6 1144 28.8
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.4e-84 318.5 928 29.8
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.1e-84 318.2 975 30.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.3e-82 312.8 1349 27.8
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.2e-81 307.8 347 48.1
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.1e-76 293.1 859 29.6
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 3.9e-71 274.6 271 52.0
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 5.3e-68 264.2 432 39.8
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.6e-64 252.7 233 54.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.3e-62 245.0 571 34.3
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 5.7e-54 217.6 483 31.7
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.3e-45 187.6 734 30.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 6.1e-40 171.0 531 28.4
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 8.0e-40 170.6 447 30.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 5.7e-38 164.5 669 31.2
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.9e-27 127.9 739 27.3
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.5e-25 123.2 257 35.4
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.4e-23 116.7 217 37.3
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 6.6e-18 97.8 330 31.5
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 4.0e-15 88.6 832 23.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.0e-15 88.6 92 51.1
Peaxi162Scf00060g00125 Petunia axillaris HOM05D006083 ORTHO05D007634 8.3e-13 80.9 113 50.4
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 7.0e-12 77.8 78 52.6
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 7.8e-11 74.3 121 34.7
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.3e-10 72.8 179 29.6
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 8.6e-10 70.9 93 47.3
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 9.5e-09 67.4 399 28.8


User provided reference genes

Program Settings