Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.4e-104 380.2 190 100.0
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-77 293.5 171 86.5
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.9e-72 276.2 171 80.1
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.8e-70 267.7 193 70.5
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.2e-69 266.9 182 74.2
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.9e-69 263.8 193 69.4
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.7e-68 261.9 169 76.9
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 8.4e-68 260.8 187 71.7
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.2e-66 256.9 142 90.8
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-66 256.9 145 86.9
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.7e-65 253.1 175 71.4
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-65 252.7 168 74.4
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 3.0e-65 252.3 177 70.6
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.1e-64 250.4 145 83.4
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.6e-64 248.1 188 67.6
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 6.2e-63 244.6 145 80.7
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 5.8e-61 238.0 145 82.1
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 5.8e-61 238.0 145 82.1
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 8.4e-60 234.2 144 77.8
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 3.2e-59 232.3 162 69.1
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 2.1e-58 229.6 182 64.3
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 2.7e-58 229.2 186 62.4
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.5e-58 228.8 145 76.6
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 6.0e-58 228.0 168 67.9
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 1.3e-57 226.9 179 63.1
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 3.0e-57 225.7 179 63.1
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 1.1e-56 223.8 179 61.5
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.5e-56 222.6 178 62.4
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 2.5e-56 222.6 168 66.7
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 3.3e-56 222.2 179 59.8
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 3.3e-56 222.2 182 59.9
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 4.3e-56 221.9 179 61.5
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 7.3e-56 221.1 179 62.6
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 7.3e-56 221.1 217 54.8
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.6e-55 219.9 180 60.0
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 1.6e-55 219.9 180 59.4
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.6e-55 219.9 179 60.9
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.6e-55 219.9 180 58.9
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 3.6e-55 218.8 179 60.9
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 3.6e-55 218.8 179 62.0
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 3.6e-55 218.8 179 61.5
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 3.6e-55 218.8 180 59.4
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.6e-55 218.8 176 63.1
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 6.2e-55 218.0 181 61.3
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.2e-55 218.0 179 61.5
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 6.2e-55 218.0 179 61.5
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 6.2e-55 218.0 180 60.0
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 8.1e-55 217.6 179 61.5
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 8.1e-55 217.6 179 60.3
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 8.1e-55 217.6 169 64.5
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.1e-54 217.2 179 60.3
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 2.4e-54 216.1 186 59.7
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 3.1e-54 215.7 179 61.5
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 3.1e-54 215.7 164 65.9
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 3.1e-54 215.7 179 61.5
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 6.9e-54 214.5 190 57.4
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 9.0e-54 214.2 191 58.1
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 9.0e-54 214.2 180 60.0
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 1.2e-53 213.8 179 60.3
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.5e-53 213.4 186 58.1
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 2.0e-53 213.0 145 69.7
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.6e-53 212.6 179 59.2
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 2.6e-53 212.6 145 69.7
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 3.4e-53 212.2 179 61.5
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 4.4e-53 211.8 186 59.7
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 4.4e-53 211.8 182 59.9
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 5.8e-53 211.5 179 60.9
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 5.8e-53 211.5 194 57.2
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 7.6e-53 211.1 179 59.8
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 1.3e-52 210.3 204 56.4
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 1.7e-52 209.9 179 59.8
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 3.8e-52 208.8 179 59.2
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 3.8e-52 208.8 179 59.2
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 3.8e-52 208.8 145 69.0
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 4.9e-52 208.4 179 59.8
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 4.9e-52 208.4 179 59.8
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 4.9e-52 208.4 179 60.3
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 6.4e-52 208.0 145 69.7
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 8.4e-52 207.6 188 56.9
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 8.4e-52 207.6 176 59.1
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.1e-51 207.2 134 73.9
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 3.2e-51 205.7 175 60.6
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 3.2e-51 205.7 179 58.1
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 5.4e-51 204.9 145 70.3
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 5.4e-51 204.9 145 70.3
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 5.4e-51 204.9 145 70.3
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 5.4e-51 204.9 145 70.3
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 5.4e-51 204.9 199 55.3
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 7.1e-51 204.5 145 69.7
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 7.1e-51 204.5 145 69.7
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 7.1e-51 204.5 145 69.7
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 7.1e-51 204.5 179 58.7
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 9.3e-51 204.1 194 55.7
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 9.3e-51 204.1 145 66.9
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.2e-50 203.8 193 53.9
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 1.2e-50 203.8 179 59.2
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.2e-50 203.8 159 67.9
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.2e-50 203.8 144 68.8
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 1.6e-50 203.4 199 55.3
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 2.1e-50 203.0 179 56.4
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 2.1e-50 203.0 122 80.3
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 2.1e-50 203.0 179 58.7
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 2.7e-50 202.6 179 57.0
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 3.5e-50 202.2 181 58.6
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 4.6e-50 201.8 179 57.5
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 7.9e-50 201.1 145 66.9
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 1.0e-49 200.7 145 67.6
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.7e-49 199.9 179 57.0
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.7e-49 199.9 145 65.5
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 2.3e-49 199.5 179 59.2
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 2.3e-49 199.5 168 61.9
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 3.9e-49 198.7 145 66.2
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 5.1e-49 198.4 185 57.3
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.1e-49 198.4 166 60.8
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 6.6e-49 198.0 196 52.6
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 6.6e-49 198.0 168 59.5
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.9e-48 196.4 185 57.3
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.9e-48 196.4 185 57.3
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.9e-48 196.4 196 55.1
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.9e-48 196.4 180 56.1
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 9.6e-48 194.1 145 66.2
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.6e-47 193.4 190 53.2
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 2.1e-47 193.0 145 69.0
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 4.8e-47 191.8 144 66.0
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.4e-46 189.5 198 52.5
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 3.1e-46 189.1 201 51.7
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 5.3e-46 188.3 144 63.9
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.5e-45 186.8 183 53.0
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 3.4e-45 185.7 179 53.6
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 7.6e-45 184.5 149 61.7
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 2.2e-44 183.0 184 52.2
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.4e-43 180.3 198 48.0
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 3.2e-43 179.1 145 62.1
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 7.1e-43 177.9 194 49.5
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 9.3e-43 177.6 124 67.7
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.6e-42 176.8 168 56.0
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.1e-42 176.4 194 49.0
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 2.7e-42 176.0 145 58.6
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.5e-42 175.6 198 47.5
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 4.6e-42 175.3 111 78.4
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.0e-41 174.1 179 51.4
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 1.0e-41 174.1 146 59.6
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 2.3e-41 172.9 145 60.0
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 3.0e-41 172.6 145 60.0
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 8.7e-41 171.0 172 55.2
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 8.7e-41 171.0 179 49.7
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 3.3e-40 169.1 184 49.5
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 8.1e-39 164.5 145 54.5
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.0e-38 161.0 204 48.0
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.0e-37 159.8 165 54.5
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 4.2e-35 152.1 186 44.6
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 1.3e-33 147.1 92 76.1
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.4e-30 137.1 126 57.9
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 9.0e-30 134.4 84 76.2
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 1.7e-28 130.2 86 73.3
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 5.0e-28 128.6 81 75.3
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 5.0e-28 128.6 92 68.5
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 3.5e-26 122.5 120 54.2
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 1.0e-25 120.9 93 64.5
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 6.7e-25 118.2 87 65.5
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 7.4e-24 114.8 79 68.4
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 5.3e-22 108.6 166 39.2
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.1e-18 95.1 56 76.8
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 2.6e-13 79.7 128 32.8
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 3.0e-09 66.2 79 44.3
CARHR060240 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.5e-08 63.9 91 39.6
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 6.3e-07 58.5 33 78.8


User provided reference genes

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