Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-95 352.4 168 100.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.4e-57 225.3 116 91.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 3.4e-57 225.3 116 91.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.1e-55 220.3 116 90.5
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.2e-55 218.4 116 88.8
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 5.5e-55 218.0 116 88.8
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.2e-54 216.9 116 88.8
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 2.1e-54 216.1 116 89.7
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 2.1e-54 216.1 116 89.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.1e-54 216.1 116 89.7
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 2.1e-54 216.1 116 89.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 6.1e-54 214.5 116 87.9
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.0e-53 213.8 116 87.9
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.8e-53 213.0 116 87.9
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.8e-53 213.0 116 87.9
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.3e-53 212.6 116 87.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 3.0e-53 212.2 116 87.9
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.7e-53 211.1 116 86.2
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.7e-53 211.1 116 86.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 6.7e-53 211.1 116 86.2
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 6.7e-53 211.1 116 86.2
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 6.7e-53 211.1 116 86.2
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 8.8e-53 210.7 116 87.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 8.8e-53 210.7 116 87.1
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 8.8e-53 210.7 116 87.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.1e-52 210.3 116 85.3
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.5e-52 209.9 116 86.2
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.3e-52 208.4 116 86.2
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.3e-52 208.4 116 86.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 5.7e-52 208.0 116 87.1
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 9.7e-52 207.2 116 86.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.7e-52 207.2 116 86.2
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 9.7e-52 207.2 116 86.2
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.7e-51 206.5 116 85.3
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.2e-51 206.1 113 87.6
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-51 206.1 116 85.3
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-51 206.1 116 85.3
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-51 206.1 116 85.3
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-51 206.1 116 85.3
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-51 206.1 116 85.3
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 85.3
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 85.3
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 83.6
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 83.6
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 83.6
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 4.8e-51 204.9 116 83.6
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 6.3e-51 204.5 116 85.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.4e-50 203.4 116 85.3
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.4e-50 203.4 116 85.3
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-48 196.1 104 89.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.9e-47 193.0 100 91.0
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.2e-47 191.8 104 88.5
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.5e-47 191.4 104 86.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.1e-46 189.5 116 80.2
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.0e-45 185.7 116 81.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 3.0e-45 185.7 116 78.4
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.5e-44 183.3 105 85.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 7.0e-42 174.5 118 72.0
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-40 169.1 181 54.1
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.8e-40 168.7 116 72.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.9e-39 166.4 116 72.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.5e-39 166.0 116 70.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.4e-37 160.2 116 69.8
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 9.7e-36 154.1 104 72.1
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.1e-34 148.7 117 67.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.1e-31 140.6 116 64.7
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.2e-28 130.6 75 82.7
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.5e-28 130.2 78 80.8
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 2.0e-28 129.8 80 80.0
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.8e-27 125.9 66 89.4
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-26 123.6 117 59.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.8e-26 123.2 64 90.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.8e-26 123.2 66 89.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 5.4e-26 121.7 66 87.9
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.6e-25 120.2 66 86.4
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.7e-24 116.7 64 85.9
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.1e-23 114.0 62 87.1
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.5e-23 113.6 121 47.9
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-22 110.5 63 82.5
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 1.5e-20 103.6 57 84.2
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.5e-20 103.6 59 84.7
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 2.6e-20 102.8 122 48.4
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.5e-20 101.3 67 76.1
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-19 100.5 59 81.4
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 3.1e-18 95.9 57 77.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.4e-18 95.1 47 89.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.9e-15 86.7 55 78.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.3e-15 84.7 56 76.8
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 7.3e-15 84.7 57 71.9
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-14 81.6 119 41.2
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.8e-13 80.1 44 81.8
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.5e-12 77.0 99 45.5
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-12 76.6 44 77.3
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.3e-11 71.2 59 66.1
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-10 70.5 40 82.5
Nitab4.5_0008916g0090 Nicotiana tabacum HOM05D005794 ORTHO05D010328 1.4e-10 70.5 67 61.2
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-10 70.5 84 46.4
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-10 69.3 39 76.9
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.0e-10 68.2 37 86.5
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.0e-08 62.0 31 83.9
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 3.3e-07 59.3 114 38.6
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 5.6e-07 58.5 70 41.4
Nitab4.5_0003222g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.6e-06 55.8 33 75.8


User provided reference genes

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