Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-86 322.8 173 100.0
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 4.3e-71 271.6 176 85.8
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.3e-71 271.6 176 85.8
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 6.2e-70 267.7 176 84.7
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-68 262.7 176 83.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-68 262.7 176 83.5
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.7e-67 259.6 176 81.8
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.2e-67 259.2 176 83.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 3.8e-67 258.5 176 82.4
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 6.4e-67 257.7 176 82.4
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.4e-66 256.5 176 82.4
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.4e-66 256.5 176 82.4
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.9e-66 256.1 176 81.8
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-66 255.8 176 82.4
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-66 255.8 176 82.4
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 4.2e-66 255.0 174 82.2
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 4.2e-66 255.0 174 82.2
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 4.2e-66 255.0 174 82.2
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 4.2e-66 255.0 174 82.2
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 4.2e-66 255.0 176 81.2
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.2e-65 253.4 176 81.8
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-65 253.1 176 80.7
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 2.7e-65 252.3 176 81.2
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 4.6e-65 251.5 174 81.0
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 4.6e-65 251.5 174 81.0
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 4.6e-65 251.5 174 81.0
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 4.6e-65 251.5 174 81.0
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-64 250.4 174 81.6
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 6.7e-64 247.7 174 81.0
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.7e-64 247.3 174 80.5
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-63 245.7 176 79.0
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-63 245.7 176 79.0
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-63 245.7 176 79.0
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 5.6e-63 244.6 174 80.5
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 2.1e-62 242.7 176 78.4
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 4.8e-62 241.5 174 78.7
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 4.8e-62 241.5 174 78.7
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 1.4e-61 240.0 174 78.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.1e-61 238.8 176 76.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 2.5e-58 229.2 174 76.4
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 9.3e-58 227.3 161 80.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 1.9e-55 219.5 168 75.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.5e-52 209.9 176 72.7
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 3.4e-52 208.8 174 70.7
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 2.5e-50 202.6 140 82.9
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.0e-48 197.2 176 69.9
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.9e-48 195.3 149 74.5
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.1e-47 193.7 174 70.1
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 7.4e-47 191.0 130 83.1
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 2.2e-46 189.5 132 79.5
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 6.3e-46 188.0 130 82.3
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.9e-42 176.4 100 92.0
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 7.9e-41 171.0 128 75.8
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.0e-40 170.6 131 73.3
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.4e-40 170.2 124 78.2
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-37 160.2 117 78.6
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 9.1e-37 157.5 175 57.1
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.8e-35 152.1 161 60.9
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 2.5e-34 149.4 90 91.1
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 2.7e-33 146.0 93 87.1
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 3.6e-33 145.6 88 90.9
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 1.0e-32 144.1 89 88.8
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.3e-30 134.8 153 59.5
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 6.5e-27 124.8 100 72.0
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.1e-26 124.0 116 69.0
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.5e-23 113.6 176 49.4
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.1e-18 97.4 71 80.3
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 4.7e-17 92.0 75 66.7
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 2.6e-15 86.3 54 83.3
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 4.4e-15 85.5 57 86.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.4e-15 85.5 63 79.4
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.4e-15 85.5 52 86.5
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.8e-13 80.1 56 78.6
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 2.4e-13 79.7 49 85.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.0e-11 74.3 89 57.3
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 2.5e-10 69.7 41 87.8
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 9.4e-10 67.8 37 91.9
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.1e-09 65.1 64 57.8
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 8.0e-09 64.7 37 89.2
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 8.0e-09 64.7 37 89.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.2e-07 60.8 57 57.9
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.7e-06 55.8 40 77.5


User provided reference genes

Program Settings