Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1503.0 866 100.0
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1308.1 898 83.4
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 0.0e+00 1173.3 866 80.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 0.0e+00 1165.6 870 80.6
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 0.0e+00 1132.1 869 78.4
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 0.0e+00 1130.2 869 78.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 0.0e+00 1085.1 871 76.8
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 3.9e-221 772.3 869 60.6
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 9.3e-207 724.5 878 56.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.7e-200 703.7 885 56.4
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 4.3e-196 689.1 892 53.5
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.6e-193 679.9 863 56.2
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 7.6e-193 678.3 873 55.3
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.0e-192 677.9 865 55.5
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 5.0e-192 675.6 859 54.1
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.4e-191 674.1 859 54.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.9e-191 673.7 869 53.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 9.3e-191 671.4 852 54.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.2e-190 671.0 852 56.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.8e-189 667.2 869 54.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.3e-188 662.5 876 54.0
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 5.7e-188 662.1 862 53.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.3e-187 661.0 879 54.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.9e-183 647.1 881 51.9
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 7.9e-182 641.7 874 51.7
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 5.1e-181 639.0 876 51.7
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 3.3e-180 636.3 869 51.8
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.3e-179 632.1 872 51.5
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 8.2e-179 631.7 856 52.5
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 3.1e-178 629.8 871 53.5
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.5e-177 627.5 871 52.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.0e-177 627.1 875 53.3
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 2.6e-177 626.7 870 50.9
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 7.7e-177 625.2 845 51.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 6.5e-176 622.1 850 52.1
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.4e-175 620.9 872 50.2
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 4.2e-175 619.4 858 51.9
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 6.1e-174 615.5 868 50.2
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 6.1e-174 615.5 858 51.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.9e-173 612.8 868 49.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 5.2e-173 612.5 876 52.1
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 2.6e-172 610.1 870 53.1
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.2e-171 607.1 861 51.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 4.8e-171 605.9 838 51.1
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.1e-170 604.7 861 48.1
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.4e-170 604.4 858 52.0
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.6e-169 600.1 874 50.5
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.2e-168 597.0 934 46.4
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.2e-168 597.0 822 53.2
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 2.2e-168 597.0 836 45.5
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.5e-167 594.3 844 46.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.5e-167 594.3 841 49.7
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 4.2e-167 592.8 868 50.5
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 5.5e-167 592.4 869 50.4
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.6e-166 590.9 834 47.6
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.6e-166 589.7 870 51.6
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.0e-165 586.6 883 49.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 4.0e-165 586.3 870 51.4
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 8.8e-165 585.1 747 55.6
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.2e-164 584.7 874 50.1
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.3e-163 581.3 863 44.6
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.7e-163 579.7 861 48.3
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 8.2e-163 578.6 873 49.7
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 2.4e-162 577.0 856 46.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.3e-162 575.9 855 51.8
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 5.3e-162 575.9 876 49.5
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 9.1e-162 575.1 844 44.8
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 4.5e-161 572.8 857 45.3
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 5.9e-161 572.4 819 49.6
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.0e-160 571.6 772 52.6
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.7e-160 570.9 819 49.9
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 8.5e-160 568.5 864 47.7
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 3.2e-159 566.6 836 47.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 2.7e-158 563.5 776 53.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 3.6e-158 563.1 813 47.0
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.6e-158 563.1 871 47.2
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.8e-157 558.9 687 56.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 8.8e-157 558.5 868 42.7
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 5.7e-156 555.8 874 45.7
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 5.7e-156 555.8 836 45.5
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 4.8e-155 552.7 852 44.8
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.1e-154 550.1 863 48.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.2e-153 548.1 825 48.6
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.9e-152 543.5 716 54.7
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 9.5e-151 538.5 874 46.7
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.1e-150 537.3 837 48.3
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.8e-150 537.0 876 44.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.4e-149 534.6 736 52.4
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.7e-147 527.7 818 49.5
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 4.9e-147 526.2 943 45.8
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 4.9e-147 526.2 972 44.4
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.0e-144 518.5 888 45.3
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 6.8e-141 505.8 838 46.9
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.4e-140 503.4 828 47.9
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 4.1e-138 496.5 812 43.6
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 3.1e-133 480.3 530 52.5
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 2.3e-128 464.2 825 44.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.3e-128 464.2 817 44.7
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 5.0e-128 463.0 825 44.1
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.5e-127 461.5 817 44.6
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 5.2e-125 453.0 876 45.2
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 9.5e-119 432.2 892 42.2
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.3e-115 421.8 917 38.6
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.1e-111 408.7 896 42.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.5e-108 398.3 838 41.9
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 6.9e-101 372.9 527 46.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 8.7e-96 355.9 799 42.8
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.7e-89 334.3 873 35.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.0e-88 332.4 899 38.2
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.1e-82 312.4 586 48.0
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.2e-67 261.5 496 37.9
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.9e-67 261.2 280 52.5
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.7e-62 245.4 585 33.2
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.8e-61 241.9 520 37.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.5e-60 237.7 523 37.5
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 1.0e-59 236.1 872 28.3
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 4.8e-46 190.7 795 31.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.5e-39 169.1 700 34.9
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.4e-37 161.8 198 52.0
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.3e-35 156.0 439 31.9
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.5e-34 151.8 375 31.2
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 3.6e-33 147.9 190 45.3
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.2e-32 144.1 111 63.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 2.5e-26 125.2 223 37.7
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.5e-23 115.9 239 37.2
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.2e-21 108.2 139 44.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 5.6e-18 97.4 276 33.7
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.7e-11 75.9 138 37.7
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 5.6e-10 70.9 63 61.9
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 2.1e-09 68.9 68 54.4
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 3.6e-09 68.2 66 59.1
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 3.6e-09 68.2 63 46.0
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 4.0e-08 64.7 299 27.1
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 6.8e-08 63.9 63 55.6
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 6.8e-08 63.9 48 58.3
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 8.9e-08 63.5 254 28.7
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 3.4e-07 61.6 128 35.2
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 2.9e-06 58.5 125 38.4
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 2.9e-06 58.5 80 45.0


User provided reference genes

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