Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.5e-125 451.4 257 100.0
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 8.8e-105 384.0 227 98.2
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 7.8e-93 344.4 227 89.4
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 7.8e-93 344.4 227 89.4
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.3e-92 343.6 227 89.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 4.3e-91 338.6 227 87.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 9.5e-91 337.4 229 88.2
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.2e-88 330.5 251 77.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.3e-84 317.0 227 80.2
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.4e-79 298.1 229 76.9
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-78 297.4 229 75.1
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.4e-78 297.0 230 77.4
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.2e-78 295.8 227 78.4
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 4.1e-78 295.4 227 77.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.4e-78 295.0 229 76.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.6e-77 293.5 229 74.7
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.6e-77 292.0 229 75.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.8e-77 291.2 231 74.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.0e-76 290.8 180 75.6
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.7e-76 290.0 230 75.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.0e-76 289.3 229 74.2
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.0e-76 289.3 232 74.6
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.1e-76 288.5 232 74.6
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.1e-75 287.3 227 74.4
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.9e-75 286.6 229 75.1
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.3e-75 285.8 227 74.9
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.3e-75 285.8 228 76.3
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.3e-75 284.6 227 73.6
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 9.5e-75 284.3 229 74.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.2e-74 283.9 227 75.3
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.2e-74 283.9 227 75.3
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.2e-74 283.9 227 73.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.6e-74 283.5 229 74.2
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.6e-74 283.5 229 74.2
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 4.7e-74 282.0 227 74.9
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 4.7e-74 282.0 229 73.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.7e-74 282.0 227 73.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-73 280.8 234 73.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-73 280.8 228 73.2
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-72 277.3 229 72.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.0e-72 276.6 229 72.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 4.4e-72 275.4 229 71.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.2e-71 273.1 229 71.6
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.9e-71 272.7 181 72.4
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 2.9e-71 272.7 229 71.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.9e-71 272.7 229 71.6
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.9e-71 271.9 228 73.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.4e-71 271.6 229 70.3
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-70 270.4 229 69.9
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.2e-70 269.2 229 71.2
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.1e-70 268.9 171 72.5
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.1e-70 268.1 229 70.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.2e-69 267.3 230 73.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.6e-69 266.9 240 68.3
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.1e-69 266.5 230 72.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.1e-69 266.5 229 71.2
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 3.5e-69 265.8 230 73.5
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.6e-69 265.4 228 71.9
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.8e-69 264.6 229 72.1
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.3e-68 263.8 179 71.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.3e-68 263.8 229 71.2
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.3e-68 263.8 231 72.3
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-68 263.8 229 71.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.7e-68 263.5 230 72.6
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.9e-68 262.3 227 67.8
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.1e-68 261.9 229 70.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-67 260.8 229 70.7
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.5e-67 260.4 229 72.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.5e-67 260.4 230 69.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.3e-67 258.1 230 70.9
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 9.6e-67 257.7 229 69.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.2e-66 257.3 229 69.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.7e-66 255.4 177 67.2
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.4e-65 253.8 231 68.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 3.1e-65 252.7 229 69.9
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 6.9e-65 251.5 231 69.7
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.6e-64 249.6 179 65.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.6e-64 249.6 284 59.5
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.8e-64 248.4 179 67.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 7.6e-64 248.1 229 67.2
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.6e-64 248.1 228 64.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 9.9e-64 247.7 181 67.4
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.3e-63 247.3 181 65.2
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.9e-63 246.1 228 68.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 3.8e-63 245.7 230 67.0
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 6.4e-63 245.0 243 65.0
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 8.4e-63 244.6 185 63.8
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.4e-62 243.8 176 64.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.4e-62 243.8 174 65.5
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 3.2e-62 242.7 185 63.2
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.2e-62 242.3 227 67.4
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.2e-62 242.3 243 64.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.2e-62 242.3 230 65.7
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 5.4e-62 241.9 181 63.5
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 9.3e-62 241.1 234 67.1
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-61 240.7 229 65.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.1e-61 240.0 182 63.7
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-61 240.0 229 65.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 2.7e-61 239.6 228 67.5
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-60 236.1 227 65.2
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.0e-60 236.1 154 73.4
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.1e-59 234.2 199 59.8
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.5e-59 233.0 231 64.9
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 4.3e-59 232.3 228 65.4
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 7.3e-59 231.5 179 61.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.0e-57 225.7 172 64.5
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 9.0e-57 224.6 227 63.9
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.0e-56 223.4 233 66.1
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 9.9e-56 221.1 161 71.4
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.7e-55 220.3 227 64.8
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.4e-54 215.3 179 60.3
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 3.5e-53 212.6 179 59.8
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 5.1e-52 208.8 180 60.0
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 5.1e-52 208.8 180 60.0
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.7e-52 208.4 183 57.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 3.3e-51 206.1 186 57.5
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 7.4e-51 204.9 183 58.5
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.1e-50 203.4 183 58.5
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-50 203.4 182 58.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 6.2e-50 201.8 183 58.5
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.2e-50 201.8 186 72.6
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 6.9e-49 198.4 228 61.4
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.2e-47 193.4 170 58.8
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 8.4e-47 191.4 152 61.8
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.8e-44 183.7 180 53.9
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 5.1e-44 182.2 173 56.1
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.4e-40 169.5 229 53.7
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 4.5e-40 169.1 229 56.3
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.7e-39 167.2 183 54.6
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.9e-38 163.7 169 49.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.2e-37 161.0 230 59.6
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.9e-35 153.7 180 51.7
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.7e-31 140.6 188 45.7
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.2e-22 108.6 197 36.5
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.9e-21 105.1 195 36.4
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.7e-19 99.0 89 57.3
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.2e-18 97.1 122 44.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 6.3e-18 95.5 177 39.0
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.9e-14 84.0 180 33.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-13 80.5 48 68.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 8.8e-12 75.1 175 35.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.3e-11 73.2 173 34.1
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.4e-11 72.8 103 42.7
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 9.7e-11 71.6 126 40.5
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.3e-10 71.2 162 35.8
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.2e-10 70.5 168 35.7
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-10 70.1 161 35.4
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 4.8e-10 69.3 173 32.9
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.2e-10 68.6 156 33.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.4e-09 67.8 151 39.1
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.4e-09 67.0 107 37.4
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.1e-09 66.2 172 32.6
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 9.1e-09 65.1 51 52.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-08 64.3 179 34.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.6e-08 63.5 65 46.2
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 3.5e-08 63.2 48 54.2
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 7.7e-08 62.0 37 67.6
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 1.3e-07 61.2 46 54.3
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.8e-07 59.7 65 44.6
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 3.8e-07 59.7 37 64.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.8e-07 59.7 47 55.3
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.8e-07 59.7 161 32.9
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 6.5e-07 58.9 33 66.7
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.5e-07 58.9 163 31.9
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 8.5e-07 58.5 45 51.1
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.1e-06 58.2 45 48.9
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-06 58.2 45 48.9
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.5e-06 57.8 45 48.9
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.5e-06 57.8 45 46.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.9e-06 57.4 76 40.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.5e-06 57.0 43 53.5
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 4.2e-06 56.2 48 47.9
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 9.4e-06 55.1 37 56.8


User provided reference genes

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