Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.9e-82 307.8 156 100.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.9e-73 279.3 189 78.3
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.2e-72 276.6 189 77.8
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.6e-72 276.2 189 77.2
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.7e-72 275.4 189 77.2
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.7e-72 275.4 189 77.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.9e-62 242.7 189 72.0
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.2e-56 223.4 187 63.1
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.8e-55 219.5 186 61.3
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 2.5e-54 215.7 189 58.7
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.1e-53 212.6 187 62.0
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.1e-53 212.6 186 59.7
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 3.7e-53 211.8 186 61.8
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.8e-53 211.5 187 60.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.8e-52 209.5 187 58.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 2.4e-52 209.1 186 60.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.1e-52 208.8 185 58.9
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 5.3e-52 208.0 185 59.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.2e-51 206.8 185 58.9
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.6e-51 205.7 185 58.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.5e-51 204.9 185 58.9
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.8e-51 204.5 187 57.2
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 5.8e-51 204.5 185 58.4
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 7.6e-51 204.1 150 74.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.2e-50 202.6 185 57.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 8.4e-50 200.7 186 58.1
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.6e-48 194.9 185 55.7
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 6.0e-48 194.5 187 57.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.1e-46 190.3 187 57.2
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 4.8e-45 184.9 187 52.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 6.2e-45 184.5 187 55.6
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.8e-44 183.0 187 55.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 4.0e-44 181.8 187 52.4
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.0e-44 181.8 186 54.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.3e-44 181.4 193 53.9
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 6.9e-44 181.0 187 55.1
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.5e-43 179.9 187 54.5
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.5e-43 179.9 187 54.5
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.5e-43 179.9 187 54.5
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.6e-43 179.1 186 53.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.6e-43 179.1 187 51.9
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.0e-42 177.2 187 52.9
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.0e-42 177.2 184 51.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.9e-42 175.6 187 51.9
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.5e-42 174.5 184 52.2
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-41 172.9 187 52.9
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-41 172.9 187 52.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.9e-41 172.9 187 51.3
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.9e-41 172.9 186 54.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.5e-41 172.6 187 52.9
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.2e-41 171.8 163 57.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 4.2e-41 171.8 187 52.4
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.2e-41 171.8 187 50.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 5.5e-41 171.4 187 50.8
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.1e-41 171.0 187 50.8
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 9.3e-41 170.6 184 50.5
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.6e-40 169.9 186 53.2
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.1e-40 169.5 187 50.8
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.1e-40 169.5 186 53.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.1e-40 169.5 183 51.4
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.7e-40 169.1 187 50.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.5e-40 168.7 193 50.8
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.0e-40 167.9 187 50.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 7.9e-40 167.5 183 49.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.0e-39 167.2 187 50.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.3e-39 166.8 187 49.7
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.8e-39 166.4 186 50.5
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.3e-39 166.0 183 52.5
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.3e-39 166.0 187 49.7
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.0e-39 165.6 187 49.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.7e-39 164.5 183 50.3
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.7e-39 164.5 183 50.3
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.7e-39 164.5 183 50.3
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 6.7e-39 164.5 187 49.2
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 8.7e-39 164.1 183 52.5
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.1e-38 163.7 166 54.8
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.1e-38 163.7 183 51.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.9e-38 162.9 184 48.4
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.9e-38 162.9 184 48.4
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.5e-38 162.5 180 49.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 3.3e-38 162.2 187 48.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 4.3e-38 161.8 183 50.8
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 5.7e-38 161.4 183 49.2
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 9.7e-38 160.6 187 47.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 9.7e-38 160.6 183 49.7
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 9.7e-38 160.6 187 49.2
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.3e-37 160.2 185 45.9
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.3e-37 160.2 187 48.7
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-37 160.2 183 48.6
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.6e-37 159.8 187 49.2
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.6e-37 159.8 184 48.4
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 2.8e-37 159.1 187 48.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.7e-37 158.7 183 49.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 3.7e-37 158.7 189 48.7
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.1e-36 157.1 187 48.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.8e-36 156.4 183 49.2
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 2.4e-36 156.0 172 50.6
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.4e-36 156.0 187 50.3
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.4e-36 156.0 198 46.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.4e-36 156.0 183 49.2
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 6.9e-36 154.5 183 48.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.2e-35 153.7 183 48.1
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-35 153.7 184 45.1
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.5e-35 151.8 184 48.9
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 4.5e-35 151.8 184 48.9
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 7.7e-35 151.0 182 47.8
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.3e-34 150.2 180 48.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.9e-34 149.1 179 48.0
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 2.9e-34 149.1 150 52.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.5e-34 147.5 184 45.7
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.2e-33 145.6 184 44.6
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 3.2e-33 145.6 184 45.1
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.6e-32 143.3 208 42.8
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.5e-30 136.7 182 41.8
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.3e-30 135.2 183 45.4
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 7.4e-30 134.4 170 47.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-28 130.6 183 39.3
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.4e-28 130.2 161 50.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.1e-28 129.0 185 37.8
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 6.9e-28 127.9 166 46.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.6e-27 125.9 149 47.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.4e-23 113.6 183 36.1
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-23 113.6 148 45.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.3e-22 109.0 183 36.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.4e-20 103.6 185 32.4
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.1e-20 102.4 136 47.1
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 5.0e-18 95.1 137 44.5
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.4e-17 93.6 97 51.5
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 3.2e-17 92.4 79 59.5
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 9.4e-17 90.9 73 57.5
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.1e-16 89.7 84 60.7
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-14 83.6 75 56.0
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.4e-14 82.0 73 60.3
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 6.3e-13 78.2 121 39.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.4e-12 76.3 88 48.9
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-11 73.2 74 45.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 5.0e-10 68.6 167 29.9
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.0e-06 56.6 187 28.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.3e-06 55.8 70 47.1


User provided reference genes

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