Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.8e-163 579.3 329 100.0
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.0e-149 532.7 328 92.7
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 2.3e-97 359.8 333 67.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 7.4e-96 354.8 332 67.2
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.3e-92 344.0 306 68.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 8.4e-92 341.3 337 68.8
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.8e-73 280.4 334 59.0
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.8e-54 217.2 324 48.8
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 9.1e-54 214.9 320 49.4
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 7.7e-53 211.8 310 49.0
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.8e-47 192.6 317 46.1
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.5e-43 181.0 316 45.3
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 8.0e-42 175.3 317 43.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.2e-40 171.4 301 45.8
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 7.5e-40 168.7 321 42.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 3.7e-39 166.4 323 41.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.1e-38 164.9 312 44.2
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.5e-37 159.8 337 40.4
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 2.3e-36 157.1 359 38.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.9e-36 156.8 365 39.2
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-35 154.8 336 41.4
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.5e-35 154.5 334 40.1
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.2e-35 152.9 336 40.2
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 5.5e-35 152.5 322 42.2
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.6e-34 151.0 316 35.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 3.6e-34 149.8 345 40.9
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 4.7e-34 149.4 361 37.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 6.1e-34 149.1 299 42.5
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-33 147.9 321 38.9
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.3e-33 147.1 221 46.6
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 3.0e-33 146.7 335 40.0
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 5.2e-33 146.0 309 39.5
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 6.8e-33 145.6 344 39.8
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.4e-32 142.9 315 38.7
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 9.8e-32 141.7 335 38.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 2.8e-31 140.2 307 38.8
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 6.3e-31 139.0 364 35.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.3e-31 138.7 315 40.3
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.1e-30 138.3 327 40.4
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.1e-30 138.3 307 36.2
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.1e-30 138.3 342 38.0
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.1e-30 136.3 315 40.0
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 4.1e-30 136.3 343 37.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 7.0e-30 135.6 323 37.2
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.0e-30 135.6 340 37.9
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 7.0e-30 135.6 346 38.2
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.6e-29 134.4 364 34.3
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.0e-29 134.0 339 38.9
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.7e-29 133.7 316 40.2
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 5.9e-29 132.5 347 38.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 7.8e-29 132.1 270 37.4
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-28 131.3 335 37.3
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-27 128.3 351 36.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 1.9e-27 127.5 319 37.6
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.3e-27 126.7 349 36.7
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 4.3e-27 126.3 191 48.2
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 4.3e-27 126.3 309 38.5
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 4.3e-27 126.3 302 39.7
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.5e-27 125.2 162 48.1
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.6e-26 124.4 323 38.4
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 2.1e-26 124.0 323 37.5
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 2.8e-26 123.6 344 34.3
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.8e-26 123.6 302 37.7
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.6e-26 123.2 319 37.9
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 4.7e-26 122.9 323 37.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 2.3e-25 120.6 293 36.9
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 2.3e-25 120.6 293 36.9
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.1e-25 120.2 314 39.2
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.2e-24 118.2 320 38.1
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.5e-24 117.9 291 36.1
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 2.6e-24 117.1 360 33.3
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.4e-24 116.7 320 33.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 4.4e-24 116.3 296 38.2
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 7.5e-24 115.5 308 34.1
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.2e-23 114.0 325 38.2
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.9e-23 113.6 324 35.8
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.7e-23 113.2 321 33.6
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 4.9e-23 112.8 303 33.7
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 6.4e-23 112.5 307 36.8
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.1e-22 111.7 344 37.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.4e-22 111.3 320 34.7
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 7.0e-22 109.0 306 35.6
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.2e-21 108.2 366 35.0
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 2.7e-21 107.1 363 35.8
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.7e-21 107.1 363 35.8
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 7.8e-21 105.5 180 43.3
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.0e-20 105.1 361 30.7
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.3e-20 104.8 319 35.1
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 3.0e-20 103.6 267 36.3
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 6.6e-20 102.4 311 36.0
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 8.6e-20 102.1 304 32.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-19 100.9 364 34.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.3e-19 100.1 330 32.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 4.3e-19 99.8 371 30.2
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.5e-19 98.6 286 32.2
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.2e-18 98.2 335 34.0
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.2e-18 98.2 358 33.8
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.6e-18 97.8 320 35.9
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-18 97.8 286 32.9
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.6e-18 97.8 286 32.2
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 3.6e-18 96.7 303 34.7
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.8e-17 94.4 358 32.1
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 5.2e-17 92.8 332 30.7
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 1.2e-16 91.7 303 31.7
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.2e-16 91.7 303 31.7
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.2e-16 91.7 303 31.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.0e-16 90.9 314 32.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 2.2e-15 87.4 348 32.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.7e-15 86.7 203 35.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 3.7e-15 86.7 324 34.3
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 4.9e-15 86.3 203 34.5
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 6.4e-15 85.9 330 28.2
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 8.3e-15 85.5 307 32.6
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 8.3e-15 85.5 353 32.9
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.1e-14 85.1 304 31.6
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.1e-14 85.1 223 37.7
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.2e-14 83.6 306 31.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 5.4e-14 82.8 188 35.1
Nitab4.5_0005127g0030 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.6e-13 81.3 128 45.3
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.5e-13 80.1 328 33.5
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 7.8e-13 79.0 201 33.8
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 1.0e-12 78.6 204 34.8
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.0e-12 77.0 316 33.2
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 6.6e-12 75.9 274 26.6
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 6.6e-12 75.9 306 30.4
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 6.6e-12 75.9 204 33.3
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 6.6e-12 75.9 204 33.3
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.5e-11 74.7 189 34.4
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.5e-11 74.7 189 34.4
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 7.3e-11 72.4 73 57.5
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 9.5e-11 72.0 307 31.3
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.6e-10 70.1 189 33.3
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.4e-09 68.2 336 26.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.4e-09 68.2 300 28.3
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 2.3e-09 67.4 290 29.3
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.0e-08 64.3 243 31.3
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 2.6e-08 63.9 317 29.3
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 3.4e-08 63.5 304 28.9
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 4.4e-08 63.2 298 27.9
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 4.4e-08 63.2 292 29.8
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 7.5e-08 62.4 302 29.5
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 4.9e-07 59.7 269 31.6
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 9.2e-06 55.5 178 27.5


User provided reference genes

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